PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIDC5AG005850.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | ARF | ||||||||
Protein Properties | Length: 891aa MW: 98337.9 Da PI: 6.169 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 73.5 | 2.5e-23 | 131 | 231 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 f+k+lt sd++++g +++p++ ae+ +++++++ +l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F ++ TRIDC5AG005850.1 131 FCKTLTASDTSTHGGFSVPRRSAEKVfppldfSLQPPCQ-ELIAKDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVIFI--WN 220 99******************************9999996.9************************************************..67 PP SEE..EEEEE- CS B3 88 sefelvvkvfr 98 ++ +l+++++ TRIDC5AG005850.1 221 DNNQLLLGIRH 231 67777888875 PP | |||||||
2 | Auxin_resp | 117.3 | 1.3e-38 | 257 | 340 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+t+s F+++YnPras+seF+++++k++k+++ ++vsvGmRf+m fete+ss rr++Gt++ +sdld+vrWpnS+Wrs+k TRIDC5AG005850.1 257 AAHAAATNSRFTIFYNPRASPSEFIIPLAKYVKSVYhTRVSVGMRFRMLFETEESSVRRYMGTITTISDLDSVRWPNSHWRSVK 340 79*********************************9789******************************************985 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 891 aa Download sequence |
MERKLSMSEM PQSLPENDGE QRCLNSELWH ACAGPLVSLP AVGSRVIYFP QGHSEQVAAS 60 TNKEVDAQIP NYPNLPPQLI CQLHNVTMHA DAETDEVYAQ MTLQPLSPEE QKEPFLPIEL 120 GAASKQPTNY FCKTLTASDT STHGGFSVPR RSAEKVFPPL DFSLQPPCQE LIAKDLHDNE 180 WKFRHIFRGQ PKRHLLTTGW SVFVSAKRLV AGDSVIFIWN DNNQLLLGIR HANRPQTIMP 240 SSVLSSDSMH IGLLAAAAHA AATNSRFTIF YNPRASPSEF IIPLAKYVKS VYHTRVSVGM 300 RFRMLFETEE SSVRRYMGTI TTISDLDSVR WPNSHWRSVK VGWDESTAGE KQPRVSLWEI 360 EPLTTFPMYP TAFPLRLKRP WASGLPSMHG MFNGVKNDDF ARYSSLMWLG DGDRGAQSLN 420 FQGVGASPWL QPRMDSPLLG LKPDTYQQMA AAALEEIRTG DPSKQSSALL QFQQTQNPNG 480 GLNSVYANHV LQQMQYQAQQ SSLQTVQHGH SQYSGNPGFL QSQFQQLHLH NPPAPPQQGH 540 QVIQQSHQEM QQQLSSGCHR ISDIDSSMPG SESASQSQSS FYQQNLLEGN NDPSLHLHNG 600 FRNFSSQDSS NLVSLPRTDQ LMAPEGWPSK RLAVEPLGHI ESRSVQPKHE NVNHQSNMSH 660 FAGTLAPQSA RDSSSVQAYG ANVDNQFLSS SFAFQDGMAG ARGGSSSGTV SMAIPLLRYS 720 GEDLPPADTL ATSSCLGESG TFNSLDNMCG VNPSQDGTFV KVYKSGSPGR SLDITRFSSY 780 YELRSELEHL FGLEGQLEDP VRSGWQLVFV DRENDILLVG DDPWQEFVNS VGCIKILSQQ 840 EVQQMVRGGE GLLSSAPGAR MAQGNVCDGY SGGHDLQNLT GNMASVPPLD Y |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30330.1 | 0.0 | ARF family protein |
Link Out ? help Back to Top | |
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Ensembl | TRIDC5AG005850.1 |