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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | TRIDC5AG003850.3 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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| Family | YABBY | ||||||||
| Protein Properties | Length: 207aa MW: 22915.8 Da PI: 8.8353 | ||||||||
| Description | YABBY family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
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| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | YABBY | 229.1 | 1.1e-70 | 9 | 180 | 6 | 170 |
YABBY 6 sseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasql.laaeshldeslkee...lleelkveeenlksnv..ekeesa 92
+e+vCyv+CnfCnt+lavsvP +s++++vtvrCGhCt+llsv+l+ +++ ++ +++es + + +++++ ++ + ++++s+
TRIDC5AG003850.3 9 PAEEVCYVHCNFCNTVLAVSVPGNSMLNIVTVRCGHCTNLLSVSLRGQMHSpVPPAPQVQESSLSKpngMNSFIRDHSSVYNNPEfgSSSSSS 101
6899*****************************************987754266667777776655466444444444444433311333344 PP
YABBY 93 stsvsseklsenedeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
s++ ++ ++ ++++++ + + rPPekrqrvPsaynrfikeei+rika+nPdishreafs+aaknWah+P+ihfgl
TRIDC5AG003850.3 102 SSKFRMPTMMFSSQNDLLQEQTlHARPPEKRQRVPSAYNRFIKEEIRRIKANNPDISHREAFSTAAKNWAHYPNIHFGL 180
4444555555555555555444479****************************************************97 PP
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| Sequence ? help Back to Top |
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| Protein Sequence Length: 207 aa Download sequence |
MSSSGQITPA EEVCYVHCNF CNTVLAVSVP GNSMLNIVTV RCGHCTNLLS VSLRGQMHSP 60 VPPAPQVQES SLSKPNGMNS FIRDHSSVYN NPEFGSSSSS SSSKFRMPTM MFSSQNDLLQ 120 EQTLHARPPE KRQRVPSAYN RFIKEEIRRI KANNPDISHR EAFSTAAKNW AHYPNIHFGL 180 NPERDDGKRL AVDDAAPAAK KIHGFCS |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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| Hit ID | E-value | Description | ||||
| AT2G26580.1 | 1e-58 | YABBY family protein | ||||
| Link Out ? help Back to Top | |
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| Ensembl | TRIDC5AG003850.3 |
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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