PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | TRIDC5AG003850.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
|
||||||||
Family | YABBY | ||||||||
Protein Properties | Length: 233aa MW: 26210 Da PI: 9.5392 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 187 | 9.5e-58 | 51 | 206 | 22 | 170 |
YABBY 22 lavsvPstslfkvvtvrCGhCtsllsvnlakasql.laaeshldeslkee...lleelkveeenlksnv..ekeesastsvsseklsenedee 108 + vsvP +s++++vtvrCGhCt+llsv+l+ +++ ++ +++es + + +++++ ++ + ++++s+s++ ++ ++ +++++ TRIDC5AG003850.1 51 VQVSVPGNSMLNIVTVRCGHCTNLLSVSLRGQMHSpVPPAPQVQESSLSKpngMNSFIRDHSSVYNNPEfgSSSSSSSSKFRMPTMMFSSQND 143 579**************************9877542666677777766554664444444444444333113333444444555555555555 PP YABBY 109 vprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 + + + rPPekrqrvPsaynrfikeei+rika+nPdishreafs+aaknWah+P+ihfgl TRIDC5AG003850.1 144 LLQEQTlHARPPEKRQRVPSAYNRFIKEEIRRIKANNPDISHREAFSTAAKNWAHYPNIHFGL 206 555444479****************************************************97 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 233 aa Download sequence |
YTPGLKSNRR PFPIHLDLWF PPPCTCLFAL DQHMLWILTY GWLILGILVC VQVSVPGNSM 60 LNIVTVRCGH CTNLLSVSLR GQMHSPVPPA PQVQESSLSK PNGMNSFIRD HSSVYNNPEF 120 GSSSSSSSSK FRMPTMMFSS QNDLLQEQTL HARPPEKRQR VPSAYNRFIK EEIRRIKANN 180 PDISHREAFS TAAKNWAHYP NIHFGLNPER DDGKRLAVDD AAPAAKKIHG FCS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G26580.1 | 7e-47 | YABBY family protein |
Link Out ? help Back to Top | |
---|---|
Ensembl | TRIDC5AG003850.1 |