PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIDC4BG054730.1
Organism
Triticum dicoccoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family RAV
Protein Properties Length: 356aa    MW: 38989.1 Da    PI: 10.0392
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIDC4BG054730.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP239.41.5e-1282130155
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       s++kGV   + +grW A+I+d      r +r+++g+f  ++ Aa+a++ a+++++g
  TRIDC4BG054730.1  82 SRFKGVVPQP-NGRWGAQIYD------RhARVWIGTFPDEDAAARAYDVAALRYRG 130
                       689***9788.8*********......44**********99*************98 PP
2B393.61.3e-29196291187
                       EEEE-..-HHHHTT-EE--HHH.HTT.........---.....--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.........ggkke...esktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 
                       f+kvltpsdv+k++r+vlpk++ae+h             +   + + l +ed +g++W+++++y+++s +yvltkGW++Fv+++gL +gD+vv
  TRIDC4BG054730.1 196 FEKVLTPSDVGKLNRIVLPKQHAEKHiplkrtpetT---TtadKAVLLNFEDGEGKVWRFRYSYWNSSLSYVLTKGWSRFVREKGLVAGDVVV 285
                       99*************************998776552...0344788999******************************************** PP

                       EEE-SS CS
                B3  82 Fkldgr 87 
                       F+ ++ 
  TRIDC4BG054730.1 286 FSCSEY 291
                       *96543 PP
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    
TLQRDVPPKG RCQATEKQQS MGVQILSSTP EHSSQHSSGA STATTESGAA GRLPTTLGLP  60
VAIPDEAVTS RSALASAQWA SSRFKGVVPQ PNGRWGAQIY DRHARVWIGT FPDEDAAARA  120
YDVAALRYRG LDAATNFPRT ASSTELAFLA AHSKAEIVDM LRKHTYSDEL RRGLHRGRGI  180
VGRAEPTPSW AREPLFEKVL TPSDVGKLNR IVLPKQHAEK HIPLKRTPET TTTADKAVLL  240
NFEDGEGKVW RFRYSYWNSS LSYVLTKGWS RFVREKGLVA GDVVVFSCSE YGQEKHFFID  300
YKKTTTVSGG AAASPPPVVE TGKGEQARVV RLFGVDLAGE MRGLAAPAEL ELFKRQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68840.22e-86RAV family protein