PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIDC4BG053390.3
Organism
Triticum dicoccoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family LBD
Protein Properties Length: 154aa    MW: 16409 Da    PI: 10.3033
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIDC4BG053390.3genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260127.46.7e-40251251100
            DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 
                       +C aCk+lrrkCa++Cv+apyf++eq +++fa++hk+FGasnv+kll++lp ++r +a+ ++ yeA+ar+rdPvyG+v++i++lqqq+++l+a
  TRIDC4BG053390.3  25 PCGACKFLRRKCARGCVFAPYFCHEQgAAHFAAIHKVFGASNVSKLLAHLPISDRAEAAVTVSYEAQARLRDPVYGCVAHIFALQQQVMTLQA 117
                       7*************************89***************************************************************** PP

            DUF260  93 elallkee 100
                       +la+lk++
  TRIDC4BG053390.3 118 QLASLKAH 125
                       ***99875 PP
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    
QSVPSPSDPG IITGRLMSMT GLGSPCGACK FLRRKCARGC VFAPYFCHEQ GAAHFAAIHK  60
VFGASNVSKL LAHLPISDRA EAAVTVSYEA QARLRDPVYG CVAHIFALQQ QVMTLQAQLA  120
SLKAHAPPAA AMAAQRPGTT PSARCWPGRR HRTT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58190.11e-62LBD family protein