PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIDC4BG050220.2
Organism
Triticum dicoccoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family AP2
Protein Properties Length: 525aa    MW: 56298.4 Da    PI: 7.929
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIDC4BG050220.2genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP236.89.8e-12254310155
               AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       s+++GV++++++gr++A+++d  + ++  ++ k  + g ++ +e+Aa+a++ a++k++g
  TRIDC4BG050220.2 254 SQFRGVTRHRWTGRYEAHLWDnTC-RKegQTrKGRQ-GGYDKEEKAARAYDLAALKYWG 310
                       789******************333.44555535555.779999**************98 PP
2AP246.49.9e-15355404355
               AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  TRIDC4BG050220.2 355 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 404
                       9***************988532...5************************998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 525 aa     Download sequence    
MDMNSGWLGF SLSSSSYAAR GYDAGEGVGC DGGDGGSCSS PTAVAAPSSP IVGVPLHSGG  60
GSGQYDGRDW RHQHAEAKGP KLEDFLSVGY GNDRSSGIYD ASHADELKYH HHQDVHHAYP  120
GSPYFQGNGG GGAVIGLDIN NAPPPPHCTG LPDHHYMPAH HGQYSLCPPN QQAAGTGAMA  180
AAPMYSSAAG FDGSTNMSIS GIKSWLRQSM YVPERSPAVP PSVHSAPTEP PPPLPAPCVP  240
VPRKLAQTFG QRTSQFRGVT RHRWTGRYEA HLWDNTCRKE GQTRKGRQGG YDKEEKAARA  300
YDLAALKYWG PTTHINFPLS TYEKELEEMK HMTRQEFIAH LRRNSSGFSR GASMYRGVTR  360
HHQHGRWQAR IGRVAGNKDL YLGTFSTQEE AAEAYDIAAI KFRGLSAVTN FDISKYDVKR  420
ICASSHLIGG DLACRRSPTR DAPALPSGVS VAVERPEAGA SDNSSDASDG HRGAHLLHGL  480
QYAHAMKYEA GEGSNGGGNW MPGAARPVAG VPAAHPLPVF ALWND
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72570.11e-112AP2 family protein