PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIDC4BG050220.1
Organism
Triticum dicoccoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family AP2
Protein Properties Length: 528aa    MW: 56673.8 Da    PI: 7.9279
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIDC4BG050220.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP248.22.7e-15254313155
               AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       s+++GV++++++gr++A+++d  +   g  ++ ++++lg ++ +e+Aa+a++ a++k++g
  TRIDC4BG050220.1 254 SQFRGVTRHRWTGRYEAHLWDnTCRkEGqtRKgRQVYLGGYDKEEKAARAYDLAALKYWG 313
                       789******************544454478446*************************98 PP
2AP246.41e-14358407355
               AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  TRIDC4BG050220.1 358 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 407
                       9***************988532...5************************998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 528 aa     Download sequence    
MDMNSGWLGF SLSSSSYAAR GYDAGEGVGC DGGDGGSCSS PTAVAAPSSP IVGVPLHSGG  60
GSGQYDGRDW RHQHAEAKGP KLEDFLSVGY GNDRSSGIYD ASHADELKYH HHQDVHHAYP  120
GSPYFQGNGG GGAVIGLDIN NAPPPPHCTG LPDHHYMPAH HGQYSLCPPN QQAAGTGAMA  180
AAPMYSSAAG FDGSTNMSIS GIKSWLRQSM YVPERSPAVP PSVHSAPTEP PPPLPAPCVP  240
VPRKLAQTFG QRTSQFRGVT RHRWTGRYEA HLWDNTCRKE GQTRKGRQVY LGGYDKEEKA  300
ARAYDLAALK YWGPTTHINF PLSTYEKELE EMKHMTRQEF IAHLRRNSSG FSRGASMYRG  360
VTRHHQHGRW QARIGRVAGN KDLYLGTFST QEEAAEAYDI AAIKFRGLSA VTNFDISKYD  420
VKRICASSHL IGGDLACRRS PTRDAPALPS GVSVAVERPE AGASDNSSDA SDGHRGAHLL  480
HGLQYAHAMK YEAGEGSNGG GNWMPGAARP VAGVPAAHPL PVFALWND
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72570.11e-116AP2 family protein