PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIDC4BG045310.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 233aa MW: 25576.6 Da PI: 6.3107 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 60.3 | 3e-19 | 62 | 115 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++++eq + Le F+k+r++ + ++ +LA++lgL+++qV vWFqNrRa++k TRIDC4BG045310.1 62 KKRRLSDEQAQFLEMSFRKERKLETPRKVQLAAELGLDTKQVAVWFQNRRARYK 115 45689************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 112.3 | 3.1e-36 | 62 | 153 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 kkrrls+eq+++LE+sF++e+kLe+ rKv+la eLgl+++qvavWFqnrRAR+k+k +E+++++L++a+da++ +n++Le+e +L+e+l+e TRIDC4BG045310.1 62 KKRRLSDEQAQFLEMSFRKERKLETPRKVQLAAELGLDTKQVAVWFQNRRARYKSKLIEEEFSKLRAAHDAVVVHNCHLEAELLRLKERLAE 153 9**************************************************************************************99975 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence |
MSPEEGERLL FPSFVFPDGF PADDATPAVS GGEQKKAGRQ RRRRRARQAA AGEGAGGDDA 60 AKKRRLSDEQ AQFLEMSFRK ERKLETPRKV QLAAELGLDT KQVAVWFQNR RARYKSKLIE 120 EEFSKLRAAH DAVVVHNCHL EAELLRLKER LAETEEEKNK AMAAAAAATT GGGGGSSPSS 180 SSFSTVTAMV GGQQFGMEEV ETDLTYMSEY AYTNYMMDLA AGGYLGGVYD QFS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 41 | 65 | RRRRRARQAAAGEGAGGDDAAKKRR |
2 | 42 | 66 | RRRRRARQAAAGEGAGGDDAAKKRR |
3 | 43 | 67 | RRRRRARQAAAGEGAGGDDAAKKRR |
4 | 62 | 83 | KKRRLSDEQAQFLEMSFRKERK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36740.1 | 5e-28 | HD-ZIP family protein |
Link Out ? help Back to Top | |
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Ensembl | TRIDC4BG045310.1 |