PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIDC4BG042950.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 227aa MW: 25927.1 Da PI: 6.2471 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 65.4 | 5.7e-21 | 1 | 39 | 13 | 51 |
HHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 13 fskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 f+kRrng+lKKA+ELS LCdaeva+iifs +g+l+e+ss TRIDC4BG042950.1 1 FAKRRNGLLKKAYELSLLCDAEVALIIFSGRGRLFEFSS 39 89***********************************96 PP | |||||||
2 | K-box | 90.4 | 3.4e-30 | 62 | 151 | 10 | 99 |
K-box 10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 a++e +q++ kLk ++e L+++qR++lGedL++Ls+keL+q+e+q++ slk+iR++Kn++ll+++ +l+ ke+elq++nk+Lrkkl+ TRIDC4BG042950.1 62 PLAENEINYQQYLKLKTRLEYLESSQRNILGEDLGPLSMKELEQIENQIDISLKHIRTRKNKVLLDELYDLKSKEQELQDQNKNLRKKLQ 151 4456677899******************************************************************************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence |
FAKRRNGLLK KAYELSLLCD AEVALIIFSG RGRLFEFSSS SCMYKTLERY RTCNCNSQEA 60 TPLAENEINY QQYLKLKTRL EYLESSQRNI LGEDLGPLSM KELEQIENQI DISLKHIRTR 120 KNKVLLDELY DLKSKEQELQ DQNKNLRKKL QDTSCAENAL HMAWQDAGQC SSSGHVIDTT 180 YSGLVQHPEH DSSVQVGYNN QAYVDQPNNE DMASQRLHGL GSSAGWI |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02310.1 | 3e-60 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Ensembl | TRIDC4BG042950.1 |