PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIDC4BG042920.3
Organism
Triticum dicoccoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MIKC_MADS
Protein Properties Length: 216aa    MW: 24954.3 Da    PI: 7.8219
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIDC4BG042920.3genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF87.95.7e-281059251
                      ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
            SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                      rienk+ rqvtf+kRrng+lKKA+ELS LCdaeva+iifs +g+l+e+ss
  TRIDC4BG042920.3 10 RIENKISRQVTFAKRRNGLLKKAYELSLLCDAEVALIIFSGRGRLFEFSS 59
                      8***********************************************96 PP
2K-box100.72.1e-33851711399
             K-box  13 kaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                       ++e  +qe+ kLk ++e Lq++qR++lGedL++Ls+keL q+e+q++ slk+iRskKn++ll+q+ el+ ke+elq+en++Lrkkl+
  TRIDC4BG042920.3  85 ESEINYQEYLKLKTRVEFLQSSQRNILGEDLGPLSMKELDQIENQIDASLKHIRSKKNQVLLDQLFELKSKEQELQDENNDLRKKLQ 171
                       556789*******************************************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    
MGRGKVEMRR IENKISRQVT FAKRRNGLLK KAYELSLLCD AEVALIIFSG RGRLFEFSSS  60
SCMYKTLERY RTCNSNSQEA TPPLESEINY QEYLKLKTRV EFLQSSQRNI LGEDLGPLSM  120
KELDQIENQI DASLKHIRSK KNQVLLDQLF ELKSKEQELQ DENNDLRKKL QDTTSCCGEN  180
AVHMSWQDGG QCSSRVLHPE HDTSMQIGYV FVHVNQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02310.12e-74MIKC_MADS family protein