PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIDC4BG042920.2
Organism
Triticum dicoccoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MIKC_MADS
Protein Properties Length: 221aa    MW: 25603.1 Da    PI: 8.1134
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIDC4BG042920.2genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF87.85.9e-281059251
                      ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
            SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                      rienk+ rqvtf+kRrng+lKKA+ELS LCdaeva+iifs +g+l+e+ss
  TRIDC4BG042920.2 10 RIENKISRQVTFAKRRNGLLKKAYELSLLCDAEVALIIFSGRGRLFEFSS 59
                      8***********************************************96 PP
2K-box99.35.5e-33901721799
             K-box  17 lqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                        +qe+ kLk ++e Lq++qR++lGedL++Ls+keL q+e+q++ slk+iRskKn++ll+q+ el+ ke+elq+en++Lrkkl+
  TRIDC4BG042920.2  90 NYQEYLKLKTRVEFLQSSQRNILGEDLGPLSMKELDQIENQIDASLKHIRSKKNQVLLDQLFELKSKEQELQDENNDLRKKLQ 172
                       579******************************************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    
MGRGKVEMRR IENKISRQVT FAKRRNGLLK KAYELSLLCD AEVALIIFSG RGRLFEFSSS  60
SCMYKTLERY RTCNSNSQEA TPPLESELIN YQEYLKLKTR VEFLQSSQRN ILGEDLGPLS  120
MKELDQIENQ IDASLKHIRS KKNQVLLDQL FELKSKEQEL QDENNDLRKK LQDTTSCCGE  180
NAVHMSWQDG GQCSSRVLHP EHDTSMQIGY PRAYMDQLNN R
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02310.12e-73MIKC_MADS family protein