PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC4BG041640.4

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

AP2

Protein Properties

Length: 567aa MW: 61462.9 Da PI: 7.282

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC4BG041640.4	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	36.8	1e-11	223	279	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d ++ +g rk + g ++ +++Aa+a++ a++k++g TRIDC4BG041640.4 223 SQYRGVTRHRWTGRYEAHLWDnSCKkDGqTRKGRQ-GGYDNEDKAARAYDLAALKYWG 279 78*****************88888885446666.6699989***********98 PP
2	AP2	47	6.2e-15	322	373	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g TRIDC4BG041640.4 322 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFTTQEEAAEAYDVAAIKFRG 373 57**************988532...5**********************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 567 aa Download sequence
MAAPPPGYYY VGGAYGDGTS TAGVYYSHHS VMPITSDGSL CIMEGMMPSS SPKLEDFLGG 60 GNGSGHDAVT YYSHHQQQQD QQDQEASRIY QHHQQQLAPY NFQHLTETEA IYQETTAPMD 120 EAMAAAKNLL VTSYGSCYSN AGMQPLSLSM SPRSQSSSCV TAAPQQHQMA AAAAAAAASM 180 AASQGGSNGG GEQCVGKKRG TGKGGQKQPV HRKSIDTFGQ RTSQYRGVTR HRWTGRYEAH 240 LWDNSCKKDG QTRKGRQGGY DNEDKAARAY DLAALKYWGA STNTNFPLEN YREEVEEMKS 300 MTRQEFVAHL RRRSSGFSRG ASIYRGVTRH HQHGRWQARI GRVAGNKDLY LGTFTTQEEA 360 AEAYDVAAIK FRGLNAVTNF DITRYDVDKI MESSSLLPGD EARKVRPIEA ANHVPSMHNG 420 GGELSHAEEG SSGVWRMVLH GTPQQAAQCT PEVADLQKGF MDGDPRSSLH GNGIAGFDVE 480 SAAHDIDVSG KINYSNSSSL VTSLSNSREG SPERFSLPSL YTKHPNAVSL ATMSPWMAMP 540 APTATHALRG PNSSIPPMPV FAAWTDA

Sequence ? help Back to Top

Protein Sequence Length: 567 aa Download sequence

MAAPPPGYYY VGGAYGDGTS TAGVYYSHHS VMPITSDGSL CIMEGMMPSS SPKLEDFLGG  60
GNGSGHDAVT YYSHHQQQQD QQDQEASRIY QHHQQQLAPY NFQHLTETEA IYQETTAPMD  120
EAMAAAKNLL VTSYGSCYSN AGMQPLSLSM SPRSQSSSCV TAAPQQHQMA AAAAAAAASM  180
AASQGGSNGG GEQCVGKKRG TGKGGQKQPV HRKSIDTFGQ RTSQYRGVTR HRWTGRYEAH  240
LWDNSCKKDG QTRKGRQGGY DNEDKAARAY DLAALKYWGA STNTNFPLEN YREEVEEMKS  300
MTRQEFVAHL RRRSSGFSRG ASIYRGVTRH HQHGRWQARI GRVAGNKDLY LGTFTTQEEA  360
AEAYDVAAIK FRGLNAVTNF DITRYDVDKI MESSSLLPGD EARKVRPIEA ANHVPSMHNG  420
GGELSHAEEG SSGVWRMVLH GTPQQAAQCT PEVADLQKGF MDGDPRSSLH GNGIAGFDVE  480
SAAHDIDVSG KINYSNSSSL VTSLSNSREG SPERFSLPSL YTKHPNAVSL ATMSPWMAMP  540
APTATHALRG PNSSIPPMPV FAAWTDA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37750.1	1e-108	AP2 family protein

Link Out ? help Back to Top
Ensembl	TRIDC4BG041640.4