PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIDC4BG039440.1
Organism
Triticum dicoccoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family NF-YC
Protein Properties Length: 242aa    MW: 25655.8 Da    PI: 5.2747
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIDC4BG039440.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC169.73.6e-53441491101
             NF-YC   1 qlksfwekq.....iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdi 88 
                       ql++fw++q     + +a+dfknh+lPlarikki+kadedv+misaeaPvl++kacelfilelt+rswlhaeenkrrtl+++d+aaa++rtd+
  TRIDC4BG039440.1  44 QLQAFWAYQrqeaeRASASDFKNHQLPLARIKKIMKADEDVRMISAEAPVLFAKACELFILELTIRSWLHAEENKRRTLQRNDVAAAIARTDV 136
                       89*****997665555689************************************************************************** PP

             NF-YC  89 fdflvdivprdel 101
                       fdflvdivpr+e 
  TRIDC4BG039440.1 137 FDFLVDIVPREEA 149
                       **********986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    
MENHQLPYTT QPPATGAAGG APVPGVPGPP PVPHHHLLQQ QQAQLQAFWA YQRQEAERAS  60
ASDFKNHQLP LARIKKIMKA DEDVRMISAE APVLFAKACE LFILELTIRS WLHAEENKRR  120
TLQRNDVAAA IARTDVFDFL VDIVPREEAK EEPGSAALGF AAGGVGAAGG GPAAGLPYYY  180
PPMGQPAAPM MPAWHVPAWE PAWQQGGADV DQGAGSFGEE GQGFTGGHGG SAGFPPGPLS  240
SE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1119125RRTLQRN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63470.27e-63NF-YC family protein