PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC4BG032710.1

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C3H

Protein Properties

Length: 299aa MW: 32867 Da PI: 7.9136

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC4BG032710.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	33.5	6.9e-11	229	253	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +ktelC+ + G C+yG+rC+FaHg TRIDC4BG032710.1 229 QKTELCNKWEG-GACSYGGRCRFAHG 253 69*****98.***********9 PP
2	zf-CCCH	19.2	2.2e-06	266	292	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ykt +C+ fa+ C+yG rC+F H+p TRIDC4BG032710.1 266 YKTLPCQMFAAASGCPYGHRCHFRHSP 292 9************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 299 aa Download sequence
MEGELGYLSP AGSSCVSTER FGWSPREKLL DSTPSSRVSD GRGKGGLLRS STWGPSPTET 60 QLHSPSSCVS DGRYISPLRM SAEQASEVHE AERLLRAIAD RYDDCFLRLR DATAEVADLR 120 LERLRLRAES MHLSLLLEEL EADQGKRAIA PAPTPPPKPT EEVAARGGAP KSISIRSKCY 180 LSQAKQPRGE AEAQSLRVRP PPAIEQAGED EAKGDGEVVE LEAYRQGTQK TELCNKWEGG 240 ACSYGGRCRF AHGLQEMRPF IRHPRYKTLP CQMFAAASGC PYGHRCHFRH SPAPTAQSY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66810.1	5e-39	C3H family protein

Link Out ? help Back to Top
Ensembl	TRIDC4BG032710.1