PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC4BG013280.1

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

Nin-like

Protein Properties

Length: 912aa MW: 100161 Da PI: 5.4637

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC4BG013280.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	90	1.9e-28	558	608	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek++sl+ l++yF++++kdAAk++gvc+T+LKriCRq+GI+RWP+Rkik++ TRIDC4BG013280.1 558 EKHVSLKILQQYFAGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKIKKV 608 799**********************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 912 aa Download sequence
MDENGTPDYS GGGSDMDLLM LSGFDDLDSF PELGAGPSFS DGILPSFSVS PVQQVTHISP 60 SPPSVDAEEQ GDVSITDGSD CSVSLASNEV MNVSAPTVPK TVYGGVTLME RMLRALAMLK 120 EASTAGPVLV QVWIPVRNGD HQVLTTSDQP FLLDERLTGY REVSRQFTFS ATEGPGLFPG 180 LPGRVFISGM PEWTSNVMYY NTSEFLRVDY AIRNEVRGSL AMPVFNSSGG SCCAVLEVVM 240 TQEKDNFCSE MDNLSNALQS VHLSTVRART HPQSLTRNQQ SVLTEILDVL RAVCHTHMLP 300 LALAWIPVCP NSSLNVSAEY GDQAIKFGLR NKDVLCVQES ACYINDMRMH DFLRACAEHP 360 LEKGQGVAGN AILSNHPFFS SDVREYDMHD YPLAHHARKF GLHAAVAIRL RSTYTGNDDY 420 VLEFFLPLTC KVREEQQLLL DDISMTMQRV CSSLRTVSDA ELKENTTTMR SEIRCSSSDV 480 SISSCNQIDV SSEVKINVPL ENQIKNSVEQ LADKKYAKFE PGTTSQNFEN CSSTGKNVSL 540 TLLQESTSDG LKIRSSTEKH VSLKILQQYF AGSLKDAAKS IGVCPTTLKR ICRQHGISRW 600 PSRKIKKVNR SLEKIQNVIS TVHGVDGVIK YDPATGCIVS SVSHTEEPSM MNVEHRSSDS 660 LPTECRKFQP DYDAYKREHL GQAVPHKAQN EKRSETHINL NPGGLSRNSH FGRTSKGSEC 720 QDASNDSYLT KEMICPGGME MWVEGAEQKN VLWNSISMPQ QCKIEIETDK SNAIVEQSLA 780 SSSSMTDCSS GGTSSDGTLK KCLKSRPVDG SNASIVVKAA YKDDTVRLKL LPSMKYQDLL 840 EEIAKRLKLS VGAFQLKYKD DEDEWVILAS DADLQECLDV LDTTGARIMK VQVRDVPCAT 900 GASSGSSFIS GQ

Sequence ? help Back to Top

Protein Sequence Length: 912 aa Download sequence

MDENGTPDYS GGGSDMDLLM LSGFDDLDSF PELGAGPSFS DGILPSFSVS PVQQVTHISP  60
SPPSVDAEEQ GDVSITDGSD CSVSLASNEV MNVSAPTVPK TVYGGVTLME RMLRALAMLK  120
EASTAGPVLV QVWIPVRNGD HQVLTTSDQP FLLDERLTGY REVSRQFTFS ATEGPGLFPG  180
LPGRVFISGM PEWTSNVMYY NTSEFLRVDY AIRNEVRGSL AMPVFNSSGG SCCAVLEVVM  240
TQEKDNFCSE MDNLSNALQS VHLSTVRART HPQSLTRNQQ SVLTEILDVL RAVCHTHMLP  300
LALAWIPVCP NSSLNVSAEY GDQAIKFGLR NKDVLCVQES ACYINDMRMH DFLRACAEHP  360
LEKGQGVAGN AILSNHPFFS SDVREYDMHD YPLAHHARKF GLHAAVAIRL RSTYTGNDDY  420
VLEFFLPLTC KVREEQQLLL DDISMTMQRV CSSLRTVSDA ELKENTTTMR SEIRCSSSDV  480
SISSCNQIDV SSEVKINVPL ENQIKNSVEQ LADKKYAKFE PGTTSQNFEN CSSTGKNVSL  540
TLLQESTSDG LKIRSSTEKH VSLKILQQYF AGSLKDAAKS IGVCPTTLKR ICRQHGISRW  600
PSRKIKKVNR SLEKIQNVIS TVHGVDGVIK YDPATGCIVS SVSHTEEPSM MNVEHRSSDS  660
LPTECRKFQP DYDAYKREHL GQAVPHKAQN EKRSETHINL NPGGLSRNSH FGRTSKGSEC  720
QDASNDSYLT KEMICPGGME MWVEGAEQKN VLWNSISMPQ QCKIEIETDK SNAIVEQSLA  780
SSSSMTDCSS GGTSSDGTLK KCLKSRPVDG SNASIVVKAA YKDDTVRLKL LPSMKYQDLL  840
EEIAKRLKLS VGAFQLKYKD DEDEWVILAS DADLQECLDV LDTTGARIMK VQVRDVPCAT  900
GASSGSSFIS GQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59580.1	1e-174	Nin-like family protein

Link Out ? help Back to Top
Ensembl	TRIDC4BG013280.1