PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIDC4BG012220.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | LBD | ||||||||
Protein Properties | Length: 230aa MW: 23668.7 Da PI: 7.5656 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 94.4 | 1.3e-29 | 2 | 104 | 1 | 98 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 +C++C+vlr++C++ Cvl+p + ++ q++++ +v+k+FG++ ++ l+a+p ++r+++++sl+yeA+ r+ +Pv+Ga+g++++ +++l+ TRIDC4BG012220.2 2 SCNGCRVLRKGCSDACVLRPSIewidgAQPQANATVFVAKFFGRAGLVASLAAVPLHHRPALFRSLLYEACGRTINPVSGAIGLMWTSNWDLC 94 6*********************9999888899************************************************************* PP DUF260 89 qlkaelallk 98 q++a+++l++ TRIDC4BG012220.2 95 QAAADAVLRG 104 ****998876 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence |
MSCNGCRVLR KGCSDACVLR PSIEWIDGAQ PQANATVFVA KFFGRAGLVA SLAAVPLHHR 60 PALFRSLLYE ACGRTINPVS GAIGLMWTSN WDLCQAAADA VLRGDSLRSL SAVPAAFTER 120 DMAGLYGNVG TNTGSSSSLH SSPENSTSAP ARKRSKNNPG CGAAGGQQVK LPGPVLPSCD 180 LDLCLTPLSS PLAGGRRGGA SDEYSTTTCC EDASGDAAEA GAPPLLNLFN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G67420.1 | 4e-55 | LBD family protein |
Link Out ? help Back to Top | |
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Ensembl | TRIDC4BG012220.2 |