PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC4BG007110.1

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

CO-like

Protein Properties

Length: 416aa MW: 45412.9 Da PI: 6.4533

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC4BG007110.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	24	7.8e-08	18	61	3	39
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg.......Htv 39 +r C+ + + +++++C ++ +lC+ C + H+ H+v TRIDC4BG007110.1 18 ARACDGCMRRRARWHCAADDAYLCQACDASVHSAnplarrhHRV 61 578*****************************668888886655 PP
2	CCT	66.4	8.2e-23	346	389	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+++RY+eKr+tR+F KkirYe+RK +Ae+RpR+KGrFvk++ TRIDC4BG007110.1 346 REARVSRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVKRT 389 9*****************************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 416 aa Download sequence
DLTRSMASAG AAIGARAARA CDGCMRRRAR WHCAADDAYL CQACDASVHS ANPLARRHHR 60 VRLPSSSSPA ATSSLQHADP DEPAWLHGLK RRPRTPRSKP GTVGKHGAPA AAKAAAASAV 120 PDLEAEDSGS GIVGDNDDVH GVEVDDEDLL YRVPVFDPML AELYNPMPVD EFREPLEQKP 180 AVCCFSSLAK QPSSEYASGV AGAADGFTGF DVVPDMELAS FAADMESLLM GGVEEGFDDL 240 RFLDEEKPQL NLDFDMADFD DQSTAAPAPE QESLEDRKRK RSDSGMILKL DYERVIDSWA 300 HDGGSPWFYG ERPHIDPGDD SWLELPAGSR GFGLGAAVTA VTGGEREARV SRYREKRRTR 360 LFAKKIRYEV RKLNAEKRPR MKGRFVKRTA LPPLPPRPPM VLAGHGHGGA HGRFRF

Sequence ? help Back to Top

Protein Sequence Length: 416 aa Download sequence

DLTRSMASAG AAIGARAARA CDGCMRRRAR WHCAADDAYL CQACDASVHS ANPLARRHHR  60
VRLPSSSSPA ATSSLQHADP DEPAWLHGLK RRPRTPRSKP GTVGKHGAPA AAKAAAASAV  120
PDLEAEDSGS GIVGDNDDVH GVEVDDEDLL YRVPVFDPML AELYNPMPVD EFREPLEQKP  180
AVCCFSSLAK QPSSEYASGV AGAADGFTGF DVVPDMELAS FAADMESLLM GGVEEGFDDL  240
RFLDEEKPQL NLDFDMADFD DQSTAAPAPE QESLEDRKRK RSDSGMILKL DYERVIDSWA  300
HDGGSPWFYG ERPHIDPGDD SWLELPAGSR GFGLGAAVTA VTGGEREARV SRYREKRRTR  360
LFAKKIRYEV RKLNAEKRPR MKGRFVKRTA LPPLPPRPPM VLAGHGHGGA HGRFRF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	89	95	LKRRPRT
2	357	373	RRTRLFAKKIRYEVRKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25440.1	2e-50	CO-like family protein

Link Out ? help Back to Top
Ensembl	TRIDC4BG007110.1