PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | TRIDC4AG055490.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 190aa MW: 20605.2 Da PI: 9.0755 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 24.1 | 8.6e-08 | 14 | 54 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+W+teEd +++G g+W+ I+r g R +k+c++rw++yl TRIDC4AG055490.1 14 RGPWSTEED-------AKHGLGRWSDIPRLAGIERGGKSCRLRWLNYL 54 799999999.......589*99**********6699**********97 PP | |||||||
2 | Myb_DNA-binding | 38.4 | 2.9e-12 | 64 | 102 | 5 | 45 |
-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 ++eE++l+++++ G+ W++Ia++++ gRt++ +k++w+ TRIDC4AG055490.1 64 SQEEEDLIIQLHSIIGNS-WTLIAACLP-GRTDNGVKNFWN 102 89**************99.*********.***********8 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 190 aa Download sequence |
MSKAPRGPRK PATRGPWSTE EDAKHGLGRW SDIPRLAGIE RGGKSCRLRW LNYLRPDLKR 60 AALSQEEEDL IIQLHSIIGN SWTLIAACLP GRTDNGVKNF WNASIKHKLR RRGIDPDTHE 120 PVVDEGSRNG DAQYILPSHL EAGSNACSHG ALSPDAAGLH HSLRGHGPAA APAWRCTCTA 180 GGVELQHGGL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G26660.1 | 2e-49 | MYB family protein |
Link Out ? help Back to Top | |
---|---|
Ensembl | TRIDC4AG055490.1 |