PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIDC4AG055220.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | LBD | ||||||||
Protein Properties | Length: 189aa MW: 20095.3 Da PI: 6.7715 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 123.2 | 1.3e-38 | 16 | 116 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 +C aCk+lrr+Ca++Cv+apyf+ae+ +++fa++hk+FGasn kll+++ + +r++a+++++yeA+ar+rdPvyG+v++i++lqqq++ l+a TRIDC4AG055220.1 16 PCGACKFLRRRCAAECVFAPYFCAEDgASQFAAIHKVFGASNAAKLLQQVAPGDRSEAAATVTYEAQARLRDPVYGCVAHIFALQQQVAALQA 108 7***********************9989***************************************************************** PP DUF260 93 elallkee 100 ++a+++++ TRIDC4AG055220.1 109 QVAHARTQ 116 ***99876 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 189 aa Download sequence |
DRTTMAGAGV TTTGSPCGAC KFLRRRCAAE CVFAPYFCAE DGASQFAAIH KVFGASNAAK 60 LLQQVAPGDR SEAAATVTYE AQARLRDPVY GCVAHIFALQ QQVAALQAQV AHARTQAHLG 120 PAATAMHPLL QQQLQQQAWQ VAEQHDHQSM TSTQSSSGCY SGAHQRSDGS SLHGAEMYCG 180 YGEQEEGSY |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G58190.1 | 5e-43 | LBD family protein |
Link Out ? help Back to Top | |
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Ensembl | TRIDC4AG055220.1 |