PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIDC4AG055210.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | LBD | ||||||||
Protein Properties | Length: 156aa MW: 16780.6 Da PI: 11.3957 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 126.6 | 1.2e-39 | 11 | 111 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 +C aCk+lrrkCa++Cv+apyf++eq +++fa++hk+FGasnv+kll++lp +r +a+ ++ yeA+ar+rdPvyG+v++i++lqqq+++l+a TRIDC4AG055210.2 11 PCGACKFLRRKCARGCVFAPYFCHEQgAAHFAAIHKVFGASNVSKLLAHLPIADRAEAAVTVSYEAQARLRDPVYGCVAHIFALQQQVMTLQA 103 7*************************89***************************************************************** PP DUF260 93 elallkee 100 +la+lk++ TRIDC4AG055210.2 104 QLASLKAH 111 ***99875 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 156 aa Download sequence |
RLMSMTGLGS PCGACKFLRR KCARGCVFAP YFCHEQGAAH FAAIHKVFGA SNVSKLLAHL 60 PIADRAEAAV TVSYEAQARL RDPVYGCVAH IFALQQQVMT LQAQLASLKA HAAPAPVSVW 120 ARRPRSSSAR TAAMAAPRPG TTPSPRCWPG RRPRTT |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G58190.1 | 4e-63 | LBD family protein |
Link Out ? help Back to Top | |
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Ensembl | TRIDC4AG055210.2 |