PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC4AG055050.9

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C2H2

Protein Properties

Length: 1181aa MW: 130608 Da PI: 5.067

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC4AG055050.9	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.4	0.00024	1071	1096	1	23
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 ++C+ C+++F ++ +L+ H r+ + TRIDC4AG055050.9 1071 FQCEidFCDMTFESRAELRAHERNiC 1096 89********************9877 PP
2	zf-C2H2	10.9	0.0015	1124	1148	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 +kCp Cg++F+ + Hir+H TRIDC4AG055050.9 1124 FKCPwdGCGMTFKWLWAQTEHIRVH 1148 89*********************99 PP
3	zf-C2H2	14.1	0.00014	1154	1180	1	23
EEET..TTTEEESSHHHHHHHHHH..T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt..H 23 y+C+ dCg++F+ s++ rH r+ H TRIDC4AG055050.9 1154 YECSvpDCGQTFRYVSDYSRHRRKfnH 1180 89999******************9777 PP

Sequence ? help Back to Top
Protein Sequence Length: 1181 aa Download sequence
GQFILRDHQI MYSVETEDLH LCILIVLCSS SKWSDQYITG FNCGEAANFA TPQWLKFAKE 60 AAVRRAVMNY LPMLSHQQLL YLLAVSFISR TPRELLYGIR TSRLRDRRKE ERELLVKREF 120 LQDMISENEL LCAFLKKKLI ENAVLWEPDL LPSSTALHSC SSGPKAPLKV DDVHSIESVP 180 KENSSSDDIA SRAGIQPKCM SMDSKSSDAM SAAEAQKLDT DTDDDGDLPF DLSIDSGSLT 240 CVACGILGFP FMAILQPSKK ALEDMSLVDI ERFKLNCEKE NHSNAIPCSP DDSISVIAKR 300 PSSPVAQSNF SHQNAESDKD GVGLDGPLLP HNNSAHSCNS ENTLNPGINT ETTETKIPSA 360 RFGIEFSKQT GRGDIDAQAT ESCGNTVDWN ITSAFVRPRI FCLQHALEIE ELLEGKGGAH 420 ALIICHADYT KLKALAISIA EEIEFQFDCK DVPLANASKS DLHLINISID DEGYKEDERD 480 WTTQMGLNMK YFAKLRKETP GCQEQPPLSF WKRLDISDKP SPISVVPNLK WLCRRARTPY 540 RVVGYAASRN ATVGPDVVSP AVTKAEMGTS GNAYENAKEQ RTGEQDAPLE PSRLQEADDV 600 ADMHTCSEDI DQDMHCLIGS KRQRTAEQNA PLQPSRLQEA DDVVDMHMCS VDNDQDMHRL 660 IGIPVAAAEY PMTHQVCEGT VSVSTCELDD LVSASTSDDP ICSAHSQDSP GVSDDFTTEQ 720 QCVQSDELTS SVAMSAQQFL VDGSMTAEDS SNHENLGSYN VTSECKDKQL QVQQEQENIE 780 LCNNAGRNLA AAVQVNSGHF GDKAVNLKSA IPTESQHEYP KRDAIVLEGM QAALTTVVSG 840 ENRNSVNTEL DSLGILLGAL AEESILADVP GKDEVDDASL TLMTLASIDQ SAGDVAHNEV 900 IETSSSSVGA SISCKGRTLS NLASDGSLRI QNAEIQNKQE NAEEVGAWNC QGLKNSRGIL 960 DSSANSLSDT GKSSGTPKAY QPDILSRSIG SSKRRSIICY VRRKRKQKRK RESELSTSNS 1020 QSFGSFARAP CERLRPRRKP AVIEEPAEQI ETAKPSAAAT KGKRSKVVEL FQCEIDFCDM 1080 TFESRAELRA HERNICTDES CGKRFQSHKY LKRHQCVHRD ERPFKCPWDG CGMTFKWLWA 1140 QTEHIRVHTG ERPYECSVPD CGQTFRYVSD YSRHRRKFNH Y

Sequence ? help Back to Top

Protein Sequence Length: 1181 aa Download sequence

GQFILRDHQI MYSVETEDLH LCILIVLCSS SKWSDQYITG FNCGEAANFA TPQWLKFAKE  60
AAVRRAVMNY LPMLSHQQLL YLLAVSFISR TPRELLYGIR TSRLRDRRKE ERELLVKREF  120
LQDMISENEL LCAFLKKKLI ENAVLWEPDL LPSSTALHSC SSGPKAPLKV DDVHSIESVP  180
KENSSSDDIA SRAGIQPKCM SMDSKSSDAM SAAEAQKLDT DTDDDGDLPF DLSIDSGSLT  240
CVACGILGFP FMAILQPSKK ALEDMSLVDI ERFKLNCEKE NHSNAIPCSP DDSISVIAKR  300
PSSPVAQSNF SHQNAESDKD GVGLDGPLLP HNNSAHSCNS ENTLNPGINT ETTETKIPSA  360
RFGIEFSKQT GRGDIDAQAT ESCGNTVDWN ITSAFVRPRI FCLQHALEIE ELLEGKGGAH  420
ALIICHADYT KLKALAISIA EEIEFQFDCK DVPLANASKS DLHLINISID DEGYKEDERD  480
WTTQMGLNMK YFAKLRKETP GCQEQPPLSF WKRLDISDKP SPISVVPNLK WLCRRARTPY  540
RVVGYAASRN ATVGPDVVSP AVTKAEMGTS GNAYENAKEQ RTGEQDAPLE PSRLQEADDV  600
ADMHTCSEDI DQDMHCLIGS KRQRTAEQNA PLQPSRLQEA DDVVDMHMCS VDNDQDMHRL  660
IGIPVAAAEY PMTHQVCEGT VSVSTCELDD LVSASTSDDP ICSAHSQDSP GVSDDFTTEQ  720
QCVQSDELTS SVAMSAQQFL VDGSMTAEDS SNHENLGSYN VTSECKDKQL QVQQEQENIE  780
LCNNAGRNLA AAVQVNSGHF GDKAVNLKSA IPTESQHEYP KRDAIVLEGM QAALTTVVSG  840
ENRNSVNTEL DSLGILLGAL AEESILADVP GKDEVDDASL TLMTLASIDQ SAGDVAHNEV  900
IETSSSSVGA SISCKGRTLS NLASDGSLRI QNAEIQNKQE NAEEVGAWNC QGLKNSRGIL  960
DSSANSLSDT GKSSGTPKAY QPDILSRSIG SSKRRSIICY VRRKRKQKRK RESELSTSNS  1020
QSFGSFARAP CERLRPRRKP AVIEEPAEQI ETAKPSAAAT KGKRSKVVEL FQCEIDFCDM  1080
TFESRAELRA HERNICTDES CGKRFQSHKY LKRHQCVHRD ERPFKCPWDG CGMTFKWLWA  1140
QTEHIRVHTG ERPYECSVPD CGQTFRYVSD YSRHRRKFNH Y

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	993	1009	KRRSIICYVRRKRKQKR
2	993	1011	KRRSIICYVRRKRKQKRKR
3	1001	1008	VRRKRKQK
4	1003	1012	RKRKQKRKRE
5	1005	1014	RKRKQKRKRE
6	1035	1039	RPRRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04240.1	2e-50	C2H2 family protein

Link Out ? help Back to Top
Ensembl	TRIDC4AG055050.9