PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC4AG055050.2

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C2H2

Protein Properties

Length: 697aa MW: 77048.7 Da PI: 5.6519

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC4AG055050.2	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.2	0.00013	587	612	1	23
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 ++C+ C+++F ++ +L+ H r+ + TRIDC4AG055050.2 587 FQCEidFCDMTFESRAELRAHERNiC 612 89********************9877 PP
2	zf-C2H2	11.7	0.00081	640	664	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 +kCp Cg++F+ + Hir+H TRIDC4AG055050.2 640 FKCPwdGCGMTFKWLWAQTEHIRVH 664 89*********************99 PP
3	zf-C2H2	14.9	7.5e-05	670	696	1	23
EEET..TTTEEESSHHHHHHHHHH..T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt..H 23 y+C+ dCg++F+ s++ rH r+ H TRIDC4AG055050.2 670 YECSvpDCGQTFRYVSDYSRHRRKfnH 696 89999******************9777 PP

Sequence ? help Back to Top
Protein Sequence Length: 697 aa Download sequence
MGLNMKYFAK LRKETPGCQE QPPLSFWKRL DISDKPSPIS VVPNLKWLCR RARTPYRVVG 60 YAASRNATVG PDVVSPAVTK AEMGTSGNAY ENAKEQRTGE QDAPLEPSRL QEADDVADMH 120 TCSEDIDQDM HCLIGSKRQR TAEQNAPLQP SRLQEADDVV DMHMCSVDND QDMHRLIGIP 180 VAAAEYPMTH QVCEGTVSVS TCELDDLVSA STSDDPICSA HSQDSPGVSD DFTTEQQCVQ 240 SDELTSSVAM SAQQFLVDGS MTAEDSSNHE NLGSYNVTSE CKDKQLQVQQ EQENIELCNN 300 AGRNLAAAVQ VNSGHFGDKA VNLKSAIPTE SQHEYPKRDA IVLEGMQAAL TTVVSGENRN 360 SVNTELDSLG ILLGALAEES ILADVPGKDE VDDASLTLMT LASIDQSAGD VAHNEVIETS 420 SSSVGASISC KGRTLSNLAS DGSLRIQNAE IQNKQENAEE VGAWNCQGLK NSRGILDSSA 480 NSLSDTGKSS GTPKAYQPDI LSRSIGSSKR RSIICYVRRK RKQKRKRESE LSTSNSQSFG 540 SFARAPCERL RPRRKPAVIE EPAEQIETAK PSAAATKGKR SKVVELFQCE IDFCDMTFES 600 RAELRAHERN ICTDESCGKR FQSHKYLKRH QCVHRDERPF KCPWDGCGMT FKWLWAQTEH 660 IRVHTGERPY ECSVPDCGQT FRYVSDYSRH RRKFNHY

Sequence ? help Back to Top

Protein Sequence Length: 697 aa Download sequence

MGLNMKYFAK LRKETPGCQE QPPLSFWKRL DISDKPSPIS VVPNLKWLCR RARTPYRVVG  60
YAASRNATVG PDVVSPAVTK AEMGTSGNAY ENAKEQRTGE QDAPLEPSRL QEADDVADMH  120
TCSEDIDQDM HCLIGSKRQR TAEQNAPLQP SRLQEADDVV DMHMCSVDND QDMHRLIGIP  180
VAAAEYPMTH QVCEGTVSVS TCELDDLVSA STSDDPICSA HSQDSPGVSD DFTTEQQCVQ  240
SDELTSSVAM SAQQFLVDGS MTAEDSSNHE NLGSYNVTSE CKDKQLQVQQ EQENIELCNN  300
AGRNLAAAVQ VNSGHFGDKA VNLKSAIPTE SQHEYPKRDA IVLEGMQAAL TTVVSGENRN  360
SVNTELDSLG ILLGALAEES ILADVPGKDE VDDASLTLMT LASIDQSAGD VAHNEVIETS  420
SSSVGASISC KGRTLSNLAS DGSLRIQNAE IQNKQENAEE VGAWNCQGLK NSRGILDSSA  480
NSLSDTGKSS GTPKAYQPDI LSRSIGSSKR RSIICYVRRK RKQKRKRESE LSTSNSQSFG  540
SFARAPCERL RPRRKPAVIE EPAEQIETAK PSAAATKGKR SKVVELFQCE IDFCDMTFES  600
RAELRAHERN ICTDESCGKR FQSHKYLKRH QCVHRDERPF KCPWDGCGMT FKWLWAQTEH  660
IRVHTGERPY ECSVPDCGQT FRYVSDYSRH RRKFNHY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	509	525	KRRSIICYVRRKRKQKR
2	509	527	KRRSIICYVRRKRKQKRKR
3	517	524	VRRKRKQK
4	519	528	RKRKQKRKRE
5	521	530	RKRKQKRKRE
6	551	555	RPRRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04240.1	8e-52	C2H2 family protein

Link Out ? help Back to Top
Ensembl	TRIDC4AG055050.2