PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIDC4AG055050.11
Organism
Triticum dicoccoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C2H2
Protein Properties Length: 1488aa    MW: 164639 Da    PI: 5.7542
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIDC4AG055050.11genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2130.0003113781403123
                         EEET..TTTEEESSHHHHHHHHHH.T CS
            zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt.H 23  
                         ++C+   C+++F ++ +L+ H r+ +
  TRIDC4AG055050.11 1378 FQCEidFCDMTFESRAELRAHERNiC 1403
                         89********************9877 PP
2zf-C2H213.80.0001814611487123
                         EEET..TTTEEESSHHHHHHHHHH..T CS
            zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt..H 23  
                         y+C+  dCg++F+  s++ rH r+  H
  TRIDC4AG055050.11 1461 YECSvpDCGQTFRYVSDYSRHRRKfnH 1487
                         89999******************9777 PP
Sequence ? help Back to Top
Protein Sequence    Length: 1488 aa     Download sequence    
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  60
XXXXXXXXXX XXXXXXXXXX XXXXXXXDPD PDPSSSNPTA PAALFTTRHQ ELGTARRGRP  120
PPQVLKQVWQ SGERYTLDQF EAKSRAFARA HLAGLRDPTP LAVESLFWKA SADRPIYVEY  180
ANDVPGSGFA ASAQSHRRPH KKRRREGAPS SPDEGDKATG WKLSSSPWNL QAIARAPGSL  240
TRFMPDDVPG VTSPMVYIGM LFSWFAWHIE DHELHSLNFL HTGAPKTWYA VPGDRAAELE  300
EVIRVHGYGG NPDRLASLAV LGEKTTLMSP EVIVAAGLPC CRLVQHPGEF VVTFPRAYHV  360
GFSHGFNCGE AANFATPQWL KFAKEAAVRR AVMNYLPMLS HQQLLYLLAV SFISRTPREL  420
LYGIRTSRLR DRRKEERELL KKLIENAVLW EPDLLPSSTA LHSCSSGPKA PLKVDDVHSI  480
ESVPKENSSS DDIASRAGIQ PKCMSMDSKS SDAMSAAEAQ KLDTDTDDDG DLPFDLSIDS  540
GSLTCVACGI LGFPFMAILQ PSKKALEDMS LVDIERFKLN CEKENHSNAI PCSPDDSISG  600
HPVIAKRPSS PVAQSNFSHQ NAESDKDGVG LDGPLLPHNN SAHSCNSENT LNPGINTETT  660
ETKIPSARFG IEFSKQTGRG DIDAQATESC GNTVDWNITS AFVRPRIFCL QHALEIEELL  720
EGKGGAHALI ICHADYTKLK ALAISIAEEI EFQFDCKDVP LANASKSDLH LINISIDDEG  780
YKEDERDWTT QMGLNMKYFA KLRKETPGCQ EQPPLSFWKR LDISDKPSPI SVVPNLKWLC  840
RRARTPYRVV GYAASRNATV GPDVVSPAVT KAEMGTSGNA YENAKEQRTG EQDAPLEPSR  900
LQEADDVADM HTCSEDIDQD MHCLIGSKRQ RTAEQNAPLQ PSRLQEADDV VDMHMCSVDN  960
DQDMHRLIGI PVAAAEYPMT HQVCEGTVSV STCELDDLVS ASTSDDPICS AHSQDSPGVS  1020
DDFTTEQQCV QSDELTSSVA MSAQQFLVDG SMTAEDSSNH ENLGSYNVTS ECKDKQLQVQ  1080
QEQENIELCN NAGRNLAAAV QVNSGHFGDK AVNLKSAIPT ESQHEYPKRD AIVLEGMQAA  1140
LTTVVSGENR NSVNTELDSL GILLGALAEE SILADVPGKD EVDDASLTLM TLASIDQSAG  1200
DVAHNEVIET SSSSVGASIS CKGRTLSNLA SDGSLRIQNA EIQNKQENAE EVGAWNCQGL  1260
KNSRGILDSS ANSLSDTGKS SGTPKAYQPD ILSRSIGSSK RRSIICYVRR KRKQKRKRES  1320
ELSTSNSQSF GSFARAPCER LRPRRKPAVI EEPAEQIETA KPSAAATKGK RSKVVELFQC  1380
EIDFCDMTFE SRAELRAHER NICTDESCGK RFQSHKYLKR HQCVHRDERP FKCPWDGCGM  1440
TFKWLWAQTE HIRVHTGERP YECSVPDCGQ TFRYVSDYSR HRRKFNHY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
113001316KRRSIICYVRRKRKQKR
213001318KRRSIICYVRRKRKQKRKR
313081315VRRKRKQK
413101319RKRKQKRKRE
513121321RKRKQKRKRE
613421346RPRRK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04240.11e-143C2H2 family protein