PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC4AG049360.5

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

NF-YC

Protein Properties

Length: 263aa MW: 27784.6 Da PI: 10.7877

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC4AG049360.5	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	25.7	2.3e-08	170	248	20	98
NF-YC 20 elPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++P+ar++ +++ + + e+ l+ ka elf+ ++ + +a + +++++ ++++av + + ++fl d vp TRIDC4AG049360.5 170 SFPMARVRLLMRDKDATIRSNNETVFLVNKASELFLEVFAKDAHQNALKERKKSITYENLSTAVCNEKRYKFLSDFVPL 248 79****99997776667778899999***98888899999999*************************995 PP

Sequence ? help Back to Top
Protein Sequence Length: 263 aa Download sequence
AEPGSGSGKQ EPSGEAGKPK PKPTPKKAKQ QASDGAAKET PSKRKRDDAG EPQPQKSAKS 60 AKKVDEATPT KKKQASSGGA EKATTPSKTP QKKEAKSAKK SPGKAEKATP TKKQQASGGP 120 EKATPSKRKH GDLESPKAAK SGQNGSSPAK KQKGKAAGAA PVAAEPGTCS FPMARVRLLM 180 RDKDATIRSN NETVFLVNKA SELFLEVFAK DAHQNALKER KKSITYENLS TAVCNEKRYK 240 FLSDFVPLRV TAGDALKAVV KEP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	23	30	PTPKKAKQ
2	43	73	KRKRDDAGEPQPQKSAKSAKKVDEATPTKKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07980.1	4e-22	NF-YC family protein

Link Out ? help Back to Top
Ensembl	TRIDC4AG049360.5