PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIDC4AG016240.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | C3H | ||||||||
Protein Properties | Length: 299aa MW: 32656.6 Da PI: 7.9139 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 33.5 | 6.9e-11 | 229 | 253 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +ktelC+ + G C+yG+rC+FaHg TRIDC4AG016240.1 229 QKTELCNKWEG-GACSYGGRCRFAHG 253 69*******98.*************9 PP | |||||||
2 | zf-CCCH | 18.9 | 2.8e-06 | 266 | 292 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ykt +C+ f++ C+yG rC+F H+p TRIDC4AG016240.1 266 YKTLPCQMFSAASGCPYGHRCHFRHSP 292 9************************86 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 299 aa Download sequence |
MEGELGYLSP AASSCVSSEG FGSSPREKLL DSTPSSHVSD GRSKGGLLRS PTWGPSPTGT 60 QLHSPSSCVS EGRYVSPLRM SAEQASEVRE AERLLRAIAD RYDDCFLRLR DATAEVADLR 120 LERLRLRAEN THLSLLLEEL EADQGKRAIA PAPTPPPKPT EEVAARGGAP KSISIRSKCY 180 LSQAKQPRGE AEAQRLRVRP PPAIEQAGED EANGDGEVVE LEAYRQGTQK TELCNKWEGG 240 ACSYGGRCRF AHGLQEMRPV IRHPRYKTLP CQMFSAASGC PYGHRCHFRH SPAPTAQSY |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66810.1 | 1e-38 | C3H family protein |
Link Out ? help Back to Top | |
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Ensembl | TRIDC4AG016240.1 |