PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIDC4AG009200.5
Organism
Triticum dicoccoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family AP2
Protein Properties Length: 499aa    MW: 54185.6 Da    PI: 7.1195
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIDC4AG009200.5genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP238.13.7e-12224280155
               AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                       s+y+GV++++++gr++A+++d  ++ +g  rk  + g ++ +++Aa+a++ a++k++g
  TRIDC4AG009200.5 224 SQYRGVTRHRWTGRYEAHLWDnSCKkDGqTRKGRQ-GGYDNEDKAARAYDLAALKYWG 280
                       78*******************88888885446666.6699989*************98 PP
2AP247.35.2e-15323374155
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  TRIDC4AG009200.5 323 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFTTQEEAAEAYDVAAIKFRG 374
                       57****************988532...5************************998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 499 aa     Download sequence    
MAAPPPGYYY VGGAYGDGTS TAGVYYSHHP VMPITSDGSL CIMEGMMPSS SPKLEDFLGG  60
GNGSGHDAVT YYSHQQQDQQ DQEASRIYHH HQQQQQQLAP YNFQHLTEAE AIYQEATAPM  120
DEAMAAAKNQ LVTSYGSCYS NAGMQPLSLS MSPRSQSSSC VSAAPQQHQM AAAAAAASLA  180
ASQGGSNGGG EQEQCVGKKR GTGKGGQKQP VHRKSIDTFG QRTSQYRGVT RHRWTGRYEA  240
HLWDNSCKKD GQTRKGRQGG YDNEDKAARA YDLAALKYWG PSTNTNFPLE NYREEVEEMK  300
SMTRQEFVAH LRRRSSGFSR GASIYRGVTR HHQHGRWQAR IGRVAGNKDL YLGTFTTQEE  360
AAEAYDVAAI KFRGLNAVTN FDITRYDVDK IMESSSLLPG DEARKVKAVE AANHVPAMHN  420
GGGEISHAEE GSSGVWRMVL HGTPQQAAQC TPEVADLQKG FMGGGDPRSS LHGIAGFDVE  480
SAAHDIDVSG KINYSNPSS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.11e-109AP2 family protein