PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIDC4AG005600.3
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family HD-ZIP
Protein Properties Length: 193aa    MW: 21275.6 Da    PI: 9.9795
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIDC4AG005600.3genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.93.9e-1961114356
                       --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
          Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                       k++++++eq + Le  F+k+r++ + ++ +LA++lgL+++qV vWFqNrRa++k
  TRIDC4AG005600.3  61 KKRRLSDEQAQFLEMNFRKERKLETPRKVQLAAELGLDTKQVAVWFQNRRARYK 114
                       45689************************************************9 PP

2HD-ZIP_I/II109.72.1e-3561146287
       HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeL 87 
                       kkrrls+eq+++LE++F++e+kLe+ rKv+la eLgl+++qvavWFqnrRAR+k+k +E+++++L++a+da++ +n+rLe+ev++ 
  TRIDC4AG005600.3  61 KKRRLSDEQAQFLEMNFRKERKLETPRKVQLAAELGLDTKQVAVWFQNRRARYKSKLIEEEFSKLRAAHDAVVVHNCRLEAEVQRN 146
                       9*********************************************************************************9975 PP

Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    
MSSEEGERLL FPSFVFPDSF PADDATPVVS GGEQKKAGRQ RRRRRARQAA SGEGGGDDAA  60
KKRRLSDEQA QFLEMNFRKE RKLETPRKVQ LAAELGLDTK QVAVWFQNRR ARYKSKLIEE  120
EFSKLRAAHD AVVVHNCRLE AEVQRNTAEA QGEVGGDGGG EKQGHGGVGG GNGRRGWQQP  180
ELFVVLDGDG NGR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14164RRRRRARQAASGEGGGDDAAKKRR
24265RRRRRARQAASGEGGGDDAAKKRR
34366RRRRRARQAASGEGGGDDAAKKRR
46182KKRRLSDEQAQFLEMNFRKERK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36740.11e-32HD-ZIP family protein