PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIDC4AG005600.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 231aa MW: 25530.5 Da PI: 6.571 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 59.5 | 5.5e-19 | 61 | 114 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++++eq + Le F+k+r++ + ++ +LA++lgL+++qV vWFqNrRa++k TRIDC4AG005600.2 61 KKRRLSDEQAQFLEMNFRKERKLETPRKVQLAAELGLDTKQVAVWFQNRRARYK 114 45689************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 111 | 7.9e-36 | 61 | 152 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 kkrrls+eq+++LE++F++e+kLe+ rKv+la eLgl+++qvavWFqnrRAR+k+k +E+++++L++a+da++ +n+rLe+e +L+e+l+e TRIDC4AG005600.2 61 KKRRLSDEQAQFLEMNFRKERKLETPRKVQLAAELGLDTKQVAVWFQNRRARYKSKLIEEEFSKLRAAHDAVVVHNCRLEAELLRLKERLAE 152 9**************************************************************************************99975 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence |
MSSEEGERLL FPSFVFPDSF PADDATPVVS GGEQKKAGRQ RRRRRARQAA SGEGGGDDAA 60 KKRRLSDEQA QFLEMNFRKE RKLETPRKVQ LAAELGLDTK QVAVWFQNRR ARYKSKLIEE 120 EFSKLRAAHD AVVVHNCRLE AELLRLKERL AETEEEKNKA MAASAAATGG GGGSSPSSSS 180 FSTVTAMVGG QQFGMEEVET DLTYMSEYAY TNYMMDLAAG GYLGGVYDQF S |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 41 | 64 | RRRRRARQAASGEGGGDDAAKKRR |
2 | 42 | 65 | RRRRRARQAASGEGGGDDAAKKRR |
3 | 43 | 66 | RRRRRARQAASGEGGGDDAAKKRR |
4 | 61 | 82 | KKRRLSDEQAQFLEMNFRKERK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36740.1 | 2e-29 | HD-ZIP family protein |
Link Out ? help Back to Top | |
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Ensembl | TRIDC4AG005600.2 |