PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC4AG001500.3

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

AP2

Protein Properties

Length: 528aa MW: 56370.4 Da PI: 7.7672

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC4AG001500.3	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	48.2	2.7e-15	254	313	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+++GV++++++gr++A+++d + g ++ ++++lg ++ +e+Aa+a++ a++k++g TRIDC4AG001500.3 254 SQFRGVTRHRWTGRYEAHLWDnTCRkEGqtRKgRQVYLGGYDKEEKAARAYDLAALKYWG 313 789****************544454478446***********************98 PP
2	AP2	46.4	1e-14	358	407	3	55
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g TRIDC4AG001500.3 358 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 407 9*************988532...5**********************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 528 aa Download sequence
MDMTSGWLGF SLSSSSSAAR GYDAGEGAGC DGGDGGSCSS PTAAAAPSSP IVGVPLHSGG 60 GSVQYDGQDW RHQHAEAKGP KLEDFLSVGY GNDRSSGSIY DASHADQLKY HHHQDVHHAY 120 PGSPYFQGNG GGGVVIGLDI NNAPPPSHCT GLPDHHFMPA HHGQYSLCPP NQQAAGAGAM 180 AAAPMYSSAA GFDGSANMSI SGIKSWLRQS MYVPEQSTSA IPPSVHAAPS EPPLPAPCVP 240 VPRKLAQTFG QRTSQFRGVT RHRWTGRYEA HLWDNTCRKE GQTRKGRQVY LGGYDKEEKA 300 ARAYDLAALK YWGPATHINF PLSTYEKELE EMKHMTRQEF IAHLRRNSSG FSRGASMYRG 360 VTRHHQHGRW QARIGRVAGN KDLYLGTFST QEEAAEAYDI AAIKFRGLSA VTNFDISKYD 420 VKRICASSHL IGGDLACRRS PTRDAPALPS GVSVAVERPE AGASDNSSDA SDGHRGAHLL 480 HGLQYAHAMK YEAGEGSNGG GSWMAAAARP VAGVPSAHPL PVFALWND

Sequence ? help Back to Top

Protein Sequence Length: 528 aa Download sequence

MDMTSGWLGF SLSSSSSAAR GYDAGEGAGC DGGDGGSCSS PTAAAAPSSP IVGVPLHSGG  60
GSVQYDGQDW RHQHAEAKGP KLEDFLSVGY GNDRSSGSIY DASHADQLKY HHHQDVHHAY  120
PGSPYFQGNG GGGVVIGLDI NNAPPPSHCT GLPDHHFMPA HHGQYSLCPP NQQAAGAGAM  180
AAAPMYSSAA GFDGSANMSI SGIKSWLRQS MYVPEQSTSA IPPSVHAAPS EPPLPAPCVP  240
VPRKLAQTFG QRTSQFRGVT RHRWTGRYEA HLWDNTCRKE GQTRKGRQVY LGGYDKEEKA  300
ARAYDLAALK YWGPATHINF PLSTYEKELE EMKHMTRQEF IAHLRRNSSG FSRGASMYRG  360
VTRHHQHGRW QARIGRVAGN KDLYLGTFST QEEAAEAYDI AAIKFRGLSA VTNFDISKYD  420
VKRICASSHL IGGDLACRRS PTRDAPALPS GVSVAVERPE AGASDNSSDA SDGHRGAHLL  480
HGLQYAHAMK YEAGEGSNGG GSWMAAAARP VAGVPSAHPL PVFALWND

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72570.1	1e-116	AP2 family protein

Link Out ? help Back to Top
Ensembl	TRIDC4AG001500.3