PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIDC4AG001500.2
Organism
Triticum dicoccoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family AP2
Protein Properties Length: 525aa    MW: 55994.9 Da    PI: 7.7679
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIDC4AG001500.2genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP236.89.8e-12254310155
               AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       s+++GV++++++gr++A+++d  + ++  ++ k  + g ++ +e+Aa+a++ a++k++g
  TRIDC4AG001500.2 254 SQFRGVTRHRWTGRYEAHLWDnTC-RKegQTrKGRQ-GGYDKEEKAARAYDLAALKYWG 310
                       789******************333.44555535555.779999**************98 PP
2AP246.49.9e-15355404355
               AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  TRIDC4AG001500.2 355 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 404
                       9***************988532...5************************998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 525 aa     Download sequence    
MDMTSGWLGF SLSSSSSAAR GYDAGEGAGC DGGDGGSCSS PTAAAAPSSP IVGVPLHSGG  60
GSVQYDGQDW RHQHAEAKGP KLEDFLSVGY GNDRSSGSIY DASHADQLKY HHHQDVHHAY  120
PGSPYFQGNG GGGVVIGLDI NNAPPPSHCT GLPDHHFMPA HHGQYSLCPP NQQAAGAGAM  180
AAAPMYSSAA GFDGSANMSI SGIKSWLRQS MYVPEQSTSA IPPSVHAAPS EPPLPAPCVP  240
VPRKLAQTFG QRTSQFRGVT RHRWTGRYEA HLWDNTCRKE GQTRKGRQGG YDKEEKAARA  300
YDLAALKYWG PATHINFPLS TYEKELEEMK HMTRQEFIAH LRRNSSGFSR GASMYRGVTR  360
HHQHGRWQAR IGRVAGNKDL YLGTFSTQEE AAEAYDIAAI KFRGLSAVTN FDISKYDVKR  420
ICASSHLIGG DLACRRSPTR DAPALPSGVS VAVERPEAGA SDNSSDASDG HRGAHLLHGL  480
QYAHAMKYEA GEGSNGGGSW MAAAARPVAG VPSAHPLPVF ALWND
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72570.11e-112AP2 family protein