PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC4AG001000.12

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

FAR1

Protein Properties

Length: 644aa MW: 73662.4 Da PI: 8.5781

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC4AG001000.12	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	28.8	1.7e-09	1	24	12	35
GATA 12 WRrgpdgnktLCnaCGlyyrkkgl 35 +Rrgp g +tLCnaCG+ ++k +l TRIDC4AG001000.12 1 MRRGPMGRRTLCNACGIAWAKGKL 24 5*******************9876 PP
2	FAR1	86.8	3.3e-27	58	143	1	88
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 +fYn+YA ++GFsvrks+s ks ++ + +rtfvCs+eg+r+++k + +k +r+r+etr+gC a++ +k ++ +k+++++++ +HnH+ TRIDC4AG001000.12 58 EFYNRYAGHIGFSVRKSSSDKS-ADNITRSRTFVCSREGFRKDKKGA-NKVKRPRPETRIGCPARMIIKITSYNKYRIAEFVADHNHQ 143 6******************9.555699**********9999.9************************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 644 aa Download sequence
MRRGPMGRRT LCNACGIAWA KGKLRKVIDS DTPIDDVPVA KMVPEVGMEF DNEDKAYEFY 60 NRYAGHIGFS VRKSSSDKSA DNITRSRTFV CSREGFRKDK KGANKVKRPR PETRIGCPAR 120 MIIKITSYNK YRIAEFVADH NHQPAPPSTM HMLRSQRVLT EVQTTECNSS EDSTTPSRFS 180 GGSLGQQAGA FRNVNFLPAD YRSSLCSKRT KNMQPGDAGG VVKYLQSMQL NNPSFFYAVQ 240 LDEDDKLTNI FWADSKSRVD FSYFSDVVCL DTTYKINAHG RPLTLFLGVN HHKQISIFGA 300 ALLYDESVES FKWLFDTFKI ATDGKQPKTI LTDQSIAASA AISAVWPSTI HCLCPWQVYQ 360 NTVKHLNHIF QGSKTFAKDF SRCVYDYEDE EGFLVGWRTM LEKYDLRNNE WLHKLFEDRD 420 KWASAYNRHV FTADINGSLQ LECVSNVLRK YLSPQFDFLS FFKHYERVLD EHRYAELQAD 480 FHASQSFPRI PPSKMLKQAA NIYTPVVFEK FRREFEMFVD SVIYSCGESG TASDYRVAVT 540 DRPGEHYVRF DSSDLSVACS CKKIESMGIQ CCHVLKVLDF RNIKELPQKY LMRRWTKDAK 600 SADRGNQEFL SDGALQTPSS RLNVPVPIIN QPQSHLNNDH DHVS

Sequence ? help Back to Top

Protein Sequence Length: 644 aa Download sequence

MRRGPMGRRT LCNACGIAWA KGKLRKVIDS DTPIDDVPVA KMVPEVGMEF DNEDKAYEFY  60
NRYAGHIGFS VRKSSSDKSA DNITRSRTFV CSREGFRKDK KGANKVKRPR PETRIGCPAR  120
MIIKITSYNK YRIAEFVADH NHQPAPPSTM HMLRSQRVLT EVQTTECNSS EDSTTPSRFS  180
GGSLGQQAGA FRNVNFLPAD YRSSLCSKRT KNMQPGDAGG VVKYLQSMQL NNPSFFYAVQ  240
LDEDDKLTNI FWADSKSRVD FSYFSDVVCL DTTYKINAHG RPLTLFLGVN HHKQISIFGA  300
ALLYDESVES FKWLFDTFKI ATDGKQPKTI LTDQSIAASA AISAVWPSTI HCLCPWQVYQ  360
NTVKHLNHIF QGSKTFAKDF SRCVYDYEDE EGFLVGWRTM LEKYDLRNNE WLHKLFEDRD  420
KWASAYNRHV FTADINGSLQ LECVSNVLRK YLSPQFDFLS FFKHYERVLD EHRYAELQAD  480
FHASQSFPRI PPSKMLKQAA NIYTPVVFEK FRREFEMFVD SVIYSCGESG TASDYRVAVT  540
DRPGEHYVRF DSSDLSVACS CKKIESMGIQ CCHVLKVLDF RNIKELPQKY LMRRWTKDAK  600
SADRGNQEFL SDGALQTPSS RLNVPVPIIN QPQSHLNNDH DHVS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	107	111	KRPRP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-116	FAR1 family protein

Link Out ? help Back to Top
Ensembl	TRIDC4AG001000.12