PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIDC3BG079920.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | SRS | ||||||||
Protein Properties | Length: 180aa MW: 17879.1 Da PI: 6.6754 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 103.9 | 2.7e-32 | 5 | 105 | 63 | 154 |
DUF702 63 aaasaaeaaskrkrelkskkqsalsstklssaeskkeletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkG 145 + a+a++a sk++r l s++q ++s+t++s+a+++++ +t+s lP++v+++avfrcvrv+svddge+e+aYq++v+i+GhvfkG TRIDC3BG079920.2 5 SPANATAAGSKKPRLL-SSQQPTTSHTSTSNATTPRSYDTTSshqdasfrgnLPRQVRAPAVFRCVRVTSVDDGEDEYAYQATVTINGHVFKG 96 4566788899999986.788889999999********9999999************************************************* PP DUF702 146 iLydqGlee 154 +LydqG+++ TRIDC3BG079920.2 97 FLYDQGVDD 105 ******986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 180 aa Download sequence |
GSSSSPANAT AAGSKKPRLL SSQQPTTSHT STSNATTPRS YDTTSSHQDA SFRGNLPRQV 60 RAPAVFRCVR VTSVDDGEDE YAYQATVTIN GHVFKGFLYD QGVDDGRASN DIDSSTGGAV 120 PNMSELHLGG GGNAARGGGG GSSSMAPSDM YGGAGAGGAG GGGGGQHILG GGSSYGNTMN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G12330.1 | 7e-27 | SRS family protein |
Link Out ? help Back to Top | |
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Ensembl | TRIDC3BG079920.2 |