PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIDC3BG064950.4
Organism
Triticum dicoccoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MIKC_MADS
Protein Properties Length: 212aa    MW: 24323.8 Da    PI: 7.6936
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIDC3BG064950.4genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF92.12.7e-29959151
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                      krien+snrqvtfskR+ng+lKKA+E+SvLCdaev v++fss gkly+++s
  TRIDC3BG064950.4  9 KRIENQSNRQVTFSKRKNGVLKKAKEISVLCDAEVGVVVFSSAGKLYDFCS 59
                      79***********************************************96 PP
2K-box73.56.1e-2574168195
             K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenka 93 
                       yq++sgk l+++k++sl+ e++++kke++n+q e+Rhl+GedL+sL+ keL  +e++L+++l++  +k++e++ + +++ ++ e+e++    +
  TRIDC3BG064950.4  74 YQTNSGKILWDEKHKSLSAEIDRIKKENDNMQIELRHLKGEDLNSLQPKELIMIEEALDNGLTSLHEKQMEHYDRLVKHGKMLEDENKLLAFK 166
                       89999999*************************************************************************999999877666 PP

             K-box  94 Lr 95 
                        +
  TRIDC3BG064950.4 167 VH 168
                       65 PP
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    
MGRGKIEIKR IENQSNRQVT FSKRKNGVLK KAKEISVLCD AEVGVVVFSS AGKLYDFCSP  60
KTSCVPLSRI LEKYQTNSGK ILWDEKHKSL SAEIDRIKKE NDNMQIELRH LKGEDLNSLQ  120
PKELIMIEEA LDNGLTSLHE KQMEHYDRLV KHGKMLEDEN KLLAFKVHQH DIALSGSMRD  180
LELGYHPDRD FAAQMPITFR VQPSHPNLQE DS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G20240.12e-70MIKC_MADS family protein