PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIDC3BG064950.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 224aa MW: 24817 Da PI: 9.0985 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 92 | 2.9e-29 | 92 | 142 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien+snrqvtfskR+ng+lKKA+E+SvLCdaev v++fss gkly+++s TRIDC3BG064950.1 92 KRIENQSNRQVTFSKRKNGVLKKAKEISVLCDAEVGVVVFSSAGKLYDFCS 142 79***********************************************96 PP | |||||||
2 | K-box | 65.9 | 1.4e-22 | 154 | 222 | 1 | 69 |
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskK 69 yq++sgk l+++k++sl+ e++++kke++n+q e+Rhl+GedL+sL+ keL +e++L+++l++ +k+ TRIDC3BG064950.1 154 YQTNSGKILWDEKHKSLSAEIDRIKKENDNMQIELRHLKGEDLNSLQPKELIMIEEALDNGLTSLHEKQ 222 89999999********************************************************99987 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 224 aa Download sequence |
PSQAKQTEPL PFPAPTPEPP RKPPHHHSSS SHGGLLYSSS SSFPTPTPTT TAIPQSHHAR 60 TGPQSARRNE PFLAPPEEEE GGGMGRGKIE IKRIENQSNR QVTFSKRKNG VLKKAKEISV 120 LCDAEVGVVV FSSAGKLYDF CSPKTSLSRI LEKYQTNSGK ILWDEKHKSL SAEIDRIKKE 180 NDNMQIELRH LKGEDLNSLQ PKELIMIEEA LDNGLTSLHE KQAL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G20240.1 | 8e-52 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Ensembl | TRIDC3BG064950.1 |