PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC3BG062990.3

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

AP2

Protein Properties

Length: 617aa MW: 65180.9 Da PI: 7.0714

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC3BG062990.3	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	33.7	9.2e-11	204	255	9	55
AP2 9 dkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 ++++gr++A+++d + g ++ ++++lg ++ +e+Aa+a++ a++k++g TRIDC3BG062990.3 204 HRWTGRYEAHLWDnSCRrEGqtRKgRQVYLGGYDKEEKAARAYDLAALKYWG 255 789********666664478446***********************98 PP
2	AP2	46.9	6.8e-15	298	349	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g TRIDC3BG062990.3 298 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 349 57**************988532...5**********************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 617 aa Download sequence
MATVNNWLGF SLSPQELPPS AAASGDVSGA DVCYNIPQDW NMRGSELSAL VAEPKLEDFL 60 GGISYSDHHH HQHKQPGGNN MVVPAGSASG GAACYANSGG SSVGYLYHPS SASLQFADSV 120 MVASSGGGVH HDGAGIMANT TANGDLNGGG GGGIGLSMIK SWLRSQPSPA QAQPPEQQRA 180 EAAAQGLSLS MNMAACIPPL VGGHRWTGRY EAHLWDNSCR REGQTRKGRQ VYLGGYDKEE 240 KAARAYDLAA LKYWGATTTT NFPVNNYEKE LDEMKHMTRQ EFVASLRRKS SGFSRGASIY 300 RGVTRHHQHG RWQARIGRVA GNKDLYLGTF STQEEAAEAY DIAAIKFRGL NAVTNFDMTR 360 YDVKSILDST ALPIGSAAKR LKDKEAATAS SLALQQQQHA GVVSGYDMGA LAAYGAAYHH 420 HHPSVAGAVA WPTIAFQTPP QQVSGGGGGH MYHPYAHAQP LRGWCKQEPD HAVIAAAHSL 480 QELHHLNLGA GGGAHDFFSQ HAQAMQQQHG GLGSIDNGAG ASLEHSTGSN SVVYNNGAAH 540 EQAAAHAHAR AVAAQAYSGG NMSRDHDDGK IAYENYLVST AEAYGGGRMA AWAPASAPPA 600 TSSSDMTGTQ LFSVWND

Sequence ? help Back to Top

Protein Sequence Length: 617 aa Download sequence

MATVNNWLGF SLSPQELPPS AAASGDVSGA DVCYNIPQDW NMRGSELSAL VAEPKLEDFL  60
GGISYSDHHH HQHKQPGGNN MVVPAGSASG GAACYANSGG SSVGYLYHPS SASLQFADSV  120
MVASSGGGVH HDGAGIMANT TANGDLNGGG GGGIGLSMIK SWLRSQPSPA QAQPPEQQRA  180
EAAAQGLSLS MNMAACIPPL VGGHRWTGRY EAHLWDNSCR REGQTRKGRQ VYLGGYDKEE  240
KAARAYDLAA LKYWGATTTT NFPVNNYEKE LDEMKHMTRQ EFVASLRRKS SGFSRGASIY  300
RGVTRHHQHG RWQARIGRVA GNKDLYLGTF STQEEAAEAY DIAAIKFRGL NAVTNFDMTR  360
YDVKSILDST ALPIGSAAKR LKDKEAATAS SLALQQQQHA GVVSGYDMGA LAAYGAAYHH  420
HHPSVAGAVA WPTIAFQTPP QQVSGGGGGH MYHPYAHAQP LRGWCKQEPD HAVIAAAHSL  480
QELHHLNLGA GGGAHDFFSQ HAQAMQQQHG GLGSIDNGAG ASLEHSTGSN SVVYNNGAAH  540
EQAAAHAHAR AVAAQAYSGG NMSRDHDDGK IAYENYLVST AEAYGGGRMA AWAPASAPPA  600
TSSSDMTGTQ LFSVWND

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G17430.1	1e-110	AP2 family protein

Link Out ? help Back to Top
Ensembl	TRIDC3BG062990.3