PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC3BG054490.1

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

MYB

Protein Properties

Length: 606aa MW: 65620.9 Da PI: 5.8745

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC3BG054490.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.3	1.3e-16	97	144	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT Ed +lvd+vk++G g+W+++ + g+ R++k+c++rw ++l TRIDC3BG054490.1 97 KGPWTSAEDAILVDYVKKHGEGNWNAVQKNTGLFRCGKSCRLRWANHL 144 79******************************************9986 PP
2	Myb_DNA-binding	51.8	1.8e-16	150	193	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g++T+eE+ l+++++ ++G++ W++ a++++ gRt++++k++w++ TRIDC3BG054490.1 150 KGAFTPEEERLIIQLHSKMGNK-WARMAAHLP-GRTDNEIKNYWNT 193 799*****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 606 aa Download sequence
PCFHSPAAPP TRPLQPRRRA GRRSCCSSAP PQLSPRPRAD RPAGGEIRPG HDGEMYRVKS 60 ESDCEMMHQE DQMDSPVGDD GSSGGSPHRG GGPPLKKGPW TSAEDAILVD YVKKHGEGNW 120 NAVQKNTGLF RCGKSCRLRW ANHLRPNLKK GAFTPEEERL IIQLHSKMGN KWARMAAHLP 180 GRTDNEIKNY WNTRIKRCQR AGLPIYPASV CNQSSNEDQG SSDFNCGENL SSDLLNGNGL 240 YLPDFTCDNF IANSEALSYA PQLSAVSISS LLGQSFASKN CGFMDQVNQA GMLKQSDHLL 300 PGLSDTINGA LSSVDQFPND SEKLKKALGF DYLHEANSSS KTIAPFGGAL TGSHAFLNGT 360 FSTSRTINGP LKMELPSLQD TESDPNSWLK YTVAPAMQPT ELVDPYLQSP TATPSVKSEC 420 ASPRNSGLLE ELLHEAQGLR SGRNQQLSVR SSSSSVSTPC DTTVISPEFD LCQEYWEERL 480 NEYAAPFSGN SLTGSTAPVS AASPDVFQLS KLSPAQSPSL GSGEQAMEPA YEPGAGDTSS 540 HPENFRPDAF FSGNTTDSSV FNNAIAMLLG NDMNTDCKPV FGHGIVFDTS PWSNMPHACQ 600 MSEEFK

Sequence ? help Back to Top

Protein Sequence Length: 606 aa Download sequence

PCFHSPAAPP TRPLQPRRRA GRRSCCSSAP PQLSPRPRAD RPAGGEIRPG HDGEMYRVKS  60
ESDCEMMHQE DQMDSPVGDD GSSGGSPHRG GGPPLKKGPW TSAEDAILVD YVKKHGEGNW  120
NAVQKNTGLF RCGKSCRLRW ANHLRPNLKK GAFTPEEERL IIQLHSKMGN KWARMAAHLP  180
GRTDNEIKNY WNTRIKRCQR AGLPIYPASV CNQSSNEDQG SSDFNCGENL SSDLLNGNGL  240
YLPDFTCDNF IANSEALSYA PQLSAVSISS LLGQSFASKN CGFMDQVNQA GMLKQSDHLL  300
PGLSDTINGA LSSVDQFPND SEKLKKALGF DYLHEANSSS KTIAPFGGAL TGSHAFLNGT  360
FSTSRTINGP LKMELPSLQD TESDPNSWLK YTVAPAMQPT ELVDPYLQSP TATPSVKSEC  420
ASPRNSGLLE ELLHEAQGLR SGRNQQLSVR SSSSSVSTPC DTTVISPEFD LCQEYWEERL  480
NEYAAPFSGN SLTGSTAPVS AASPDVFQLS KLSPAQSPSL GSGEQAMEPA YEPGAGDTSS  540
HPENFRPDAF FSGNTTDSSV FNNAIAMLLG NDMNTDCKPV FGHGIVFDTS PWSNMPHACQ  600
MSEEFK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06100.3	6e-82	MYB family protein

Link Out ? help Back to Top
Ensembl	TRIDC3BG054490.1