PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIDC3BG053080.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 683aa MW: 74768 Da PI: 8.2899 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 50.4 | 3.8e-16 | 45 | 99 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 r+ ++++++q+++Le +F + +p++++r +++++gLt +qVk+WFqN+R+ +k TRIDC3BG053080.2 45 RRLQRLNPQQTQVLEGFFGICAHPDENQRMGMSESTGLTMQQVKFWFQNKRTHMK 99 6667899*********************************************998 PP | |||||||
2 | START | 102.1 | 9.7e-33 | 198 | 412 | 1 | 203 |
HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....... CS START 1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....... 77 ela++a+ e+v + +++ p+W+ ++ + +n++ + q+f + + + +ea ra g+v m++ + v ++d+ +++ ++ TRIDC3BG053080.2 198 ELAQSAMHEFVVLSESGGPLWMPVPggslDVLNKMAYAQTFGAGSSanaigFMTEATRADGMVMMDAKQIVDYIMDSE-CYTSFCPglvtsan 289 57899************************************77666999*******************9999999999.******99999555 PP EEEEEEEECTT...EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEE CS START 78 kaetlevissg...galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtw 166 ++++ +s+ ga +lm+ e++++splvp R+ +fvR++r ++ g+ +ivdvS+d+ + ++++ pSgili+++ s+vt+ TRIDC3BG053080.2 290 TTKVYKWPTSAgynGAMHLMTVETVFPSPLVPsRKCTFVRCCRDMQNGTVIIVDVSLDNGDGT------FKCHKMPSGILIRSLNSDASQVTV 376 555555555658***********************************************9995......68********************** PP EE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXX CS START 167 vehvdlkgrlphwllrslvksglaegaktwvatlqrq 203 vehv +++ +h+l+r+ + sgl++ga++wv+ rq TRIDC3BG053080.2 377 VEHVQVNDTGVHELYRPSL-SGLMFGARRWVSSIVRQ 412 *****************98.699********876665 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 683 aa Download sequence |
MTGNRGGRRR KAPQQGRRAR DNDLDISQSN SDGQDGAEGS QQPKRRLQRL NPQQTQVLEG 60 FFGICAHPDE NQRMGMSEST GLTMQQVKFW FQNKRTHMKH VTGKEETYRM KAQNEMLREE 120 NKRLASAAKT AFCPACVALP GLNPSVEVQR LRQENESLKQ QLSQLRAEAH PSSSRPFQLD 180 PSTENIIGRE NDMDAIAELA QSAMHEFVVL SESGGPLWMP VPGGSLDVLN KMAYAQTFGA 240 GSSANAIGFM TEATRADGMV MMDAKQIVDY IMDSECYTSF CPGLVTSANT TKVYKWPTSA 300 GYNGAMHLMT VETVFPSPLV PSRKCTFVRC CRDMQNGTVI IVDVSLDNGD GTFKCHKMPS 360 GILIRSLNSD ASQVTVVEHV QVNDTGVHEL YRPSLSGLMF GARRWVSSIV RQSARMRDLF 420 IVSKSASNGN TNGRKTLMKI ADGLLADYAS GIAAVPGSGW TILRGAGTED DIRITYRKNN 480 DDSNNAVVSV CASFHLPVPL KVTFDLLKNN LLRPKWDVLV NGNSVREEVA VCKGVRAGID 540 DVVSILHLKD PPTGENRDNI MILQNSGYDV SGAFMVYCPV NIQVMNEIMS PSNTAESNNV 600 SLYPTGFHLL PVEDTALGLG EGGATLVTAG FQIMLKLARG TGLYPRSATT AAGLMTENIA 660 TIKKTLTSSH PIFYRRQPPN NLI |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G04890.1 | 1e-110 | HD-ZIP family protein |
Link Out ? help Back to Top | |
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Ensembl | TRIDC3BG053080.2 |