PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC3BG045780.7

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

HB-PHD

Protein Properties

Length: 833aa MW: 91163.1 Da PI: 6.25

Description

HB-PHD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC3BG045780.7	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	28.1	3.4e-09	592	631	13	52
HHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS Homeobox 13 eeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrR 52 + L+++Fek++yps+ ++e L ++lgLt q++ WF R TRIDC3BG045780.7 592 QKLKAYFEKEPYPSRPAKESLGQELGLTFHQITRWFSSTR 631 689*********************************8776 PP
2	PHD	42.1	2e-14	241	296	1	51
SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS PHD 1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51 +C++C + + +++++lCdg C++ fH+kCl+++l e++p+g wlC+ C++k TRIDC3BG045780.7 241 FCAICASkhVTLKNDIILCDGvCDRGFHQKCLNPPLLAEDIPQGdeGWLCPACDCK 296 7****65555****77*****************999*****985 PP

Sequence ? help Back to Top
Protein Sequence Length: 833 aa Download sequence
MGKTSASGVV QENEKVGNGS PSSPTKGKRG RKGSQIISNK KYPLRSAHSS ARVLRSTSKD 60 KSKTPNEPVS PLRSAHSSPR VLRSTPKNKS KTPKKQVNSL RSAHSSARVL SSTLKKKVPN 120 EPVNNSTAAQ PAARKRKRGR PSNAASPKNE CIKIRQRVRY ILNRMNYEQS FIQAYAGEGW 180 KGQSLEKIRP EKELERAKAE ILRCKLRIRE AFRNMDSLLL EGKLDESLFD SEGEISSEDI 240 FCAICASKHV TLKNDIILCD GVCDRGFHQK CLNPPLLAED IPQGDEGWLC PACDCKLDCI 300 DLLNELQGST LAIHDSWEKV FPESTSNGLN QIGASDLPSD DSEEDYDPTL AEGDTVDEDK 360 SSAEDGDEGS DSDDLDFITS SDESEPSKKK KSESKNKNTV NDLALPSDDS EDDDFDPEGP 420 NSSEDQKTKT NSDESDFTSD SDDFCAEISK SSGKDKVSAP SFSDQTNGVD IMEAELEQDS 480 VLPASNRRQV GTLDYKKLYD EAYGKETTDS SDEKEWSGHS PNGNPEDSDT DSFAGPLKPA 540 KTRRARGGRQ NNERTAQSER HSGSVSEQHP EVLSNGTSST ARKKGYGPIV NQKLKAYFEK 600 EPYPSRPAKE SLGQELGLTF HQITRWFSST RHYSRVTATK KGKRSENYTA ENNDGIAADS 660 IQQREPNGSV LGKPNVDRNG IISEERMAQK NLDEGEKEDT PFRQRISCEQ TLDGTPANKH 720 NTANSREVDP PIGAPGGNQQ SDTSRNAEDT PLGQDIGCEQ TVAAINQNCT IGSSNVGSPK 780 GVPGGNKRLN NSPSVGSPRR GSAEKNIPGL EHVDEARRKA ILRELRKMKA AGK

Sequence ? help Back to Top

Protein Sequence Length: 833 aa Download sequence

MGKTSASGVV QENEKVGNGS PSSPTKGKRG RKGSQIISNK KYPLRSAHSS ARVLRSTSKD  60
KSKTPNEPVS PLRSAHSSPR VLRSTPKNKS KTPKKQVNSL RSAHSSARVL SSTLKKKVPN  120
EPVNNSTAAQ PAARKRKRGR PSNAASPKNE CIKIRQRVRY ILNRMNYEQS FIQAYAGEGW  180
KGQSLEKIRP EKELERAKAE ILRCKLRIRE AFRNMDSLLL EGKLDESLFD SEGEISSEDI  240
FCAICASKHV TLKNDIILCD GVCDRGFHQK CLNPPLLAED IPQGDEGWLC PACDCKLDCI  300
DLLNELQGST LAIHDSWEKV FPESTSNGLN QIGASDLPSD DSEEDYDPTL AEGDTVDEDK  360
SSAEDGDEGS DSDDLDFITS SDESEPSKKK KSESKNKNTV NDLALPSDDS EDDDFDPEGP  420
NSSEDQKTKT NSDESDFTSD SDDFCAEISK SSGKDKVSAP SFSDQTNGVD IMEAELEQDS  480
VLPASNRRQV GTLDYKKLYD EAYGKETTDS SDEKEWSGHS PNGNPEDSDT DSFAGPLKPA  540
KTRRARGGRQ NNERTAQSER HSGSVSEQHP EVLSNGTSST ARKKGYGPIV NQKLKAYFEK  600
EPYPSRPAKE SLGQELGLTF HQITRWFSST RHYSRVTATK KGKRSENYTA ENNDGIAADS  660
IQQREPNGSV LGKPNVDRNG IISEERMAQK NLDEGEKEDT PFRQRISCEQ TLDGTPANKH  720
NTANSREVDP PIGAPGGNQQ SDTSRNAEDT PLGQDIGCEQ TVAAINQNCT IGSSNVGSPK  780
GVPGGNKRLN NSPSVGSPRR GSAEKNIPGL EHVDEARRKA ILRELRKMKA AGK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	115	137	KKKVPNEPVNNSTAAQPAARKRK
2	133	139	ARKRKRG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19510.1	4e-82	HB-PHD family protein

Link Out ? help Back to Top
Ensembl	TRIDC3BG045780.7