PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC3BG045780.14

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

HB-PHD

Protein Properties

Length: 845aa MW: 92501.8 Da PI: 6.3172

Description

HB-PHD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC3BG045780.14	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	28.1	3.4e-09	604	643	13	52
HHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS Homeobox 13 eeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrR 52 + L+++Fek++yps+ ++e L ++lgLt q++ WF R TRIDC3BG045780.14 604 QKLKAYFEKEPYPSRPAKESLGQELGLTFHQITRWFSSTR 643 689*********************************8776 PP
2	PHD	42.1	2e-14	241	296	1	51
SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS PHD 1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51 +C++C + + +++++lCdg C++ fH+kCl+++l e++p+g wlC+ C++k TRIDC3BG045780.14 241 FCAICASkhVTLKNDIILCDGvCDRGFHQKCLNPPLLAEDIPQGdeGWLCPACDCK 296 7****65555****77*****************999*****985 PP

Sequence ? help Back to Top
Protein Sequence Length: 845 aa Download sequence
MGKTSASGVV QENEKVGNGS PSSPTKGKRG RKGSQIISNK KYPLRSAHSS ARVLRSTSKD 60 KSKTPNEPVS PLRSAHSSPR VLRSTPKNKS KTPKKQVNSL RSAHSSARVL SSTLKKKVPN 120 EPVNNSTAAQ PAARKRKRGR PSNAASPKNE CIKIRQRVRY ILNRMNYEQS FIQAYAGEGW 180 KGQSLEKIRP EKELERAKAE ILRCKLRIRE AFRNMDSLLL EGKLDESLFD SEGEISSEDI 240 FCAICASKHV TLKNDIILCD GVCDRGFHQK CLNPPLLAED IPQGDEGWLC PACDCKLDCI 300 DLLNELQGST LAIHDSWEKV FPESTSNGLN QIGASDLPSD DSEEDYDPTL AEGDTVDEDK 360 SSAEDGDEGS DSDDLDFITS SDESEPSKKK KSESKNKNTV NDLALPSDDS EDDDFDPEGP 420 NSSEDQKTKT NSDESDFTSD SDDFCAEISK SSGKDKVSAP SFSDQTNGVD IMEAELEQDS 480 VLPASNRRQV GTLDYKKLYD VCLLLAFLHT INEAYGKETT DSSDEKEWSG HSPNGNPEDS 540 DTDSFAGPLK PAKTRRARGG RQNNERTAQS ERHSGSVSEQ HPEVLSNGTS STARKKGYGP 600 IVNQKLKAYF EKEPYPSRPA KESLGQELGL TFHQITRWFS STRHYSRVTA TKKGKRSENY 660 TAENNDGIAA DSIQQREPNG SVLGKPNVDR NGIISEERMA QKNLDEGEKE DTPFRQRISC 720 EQTLDGTPAN KHNTANSREV DPPIGAPGGN QQSDTSRNAE DTPLGQDIGC EQTVAAINQN 780 CTIGSSNVGS PKGVPGGNKR LNNSPSVGSP RRGSAEKNIP GLEHVDEARR KAILRELRKM 840 KAAGK

Sequence ? help Back to Top

Protein Sequence Length: 845 aa Download sequence

MGKTSASGVV QENEKVGNGS PSSPTKGKRG RKGSQIISNK KYPLRSAHSS ARVLRSTSKD  60
KSKTPNEPVS PLRSAHSSPR VLRSTPKNKS KTPKKQVNSL RSAHSSARVL SSTLKKKVPN  120
EPVNNSTAAQ PAARKRKRGR PSNAASPKNE CIKIRQRVRY ILNRMNYEQS FIQAYAGEGW  180
KGQSLEKIRP EKELERAKAE ILRCKLRIRE AFRNMDSLLL EGKLDESLFD SEGEISSEDI  240
FCAICASKHV TLKNDIILCD GVCDRGFHQK CLNPPLLAED IPQGDEGWLC PACDCKLDCI  300
DLLNELQGST LAIHDSWEKV FPESTSNGLN QIGASDLPSD DSEEDYDPTL AEGDTVDEDK  360
SSAEDGDEGS DSDDLDFITS SDESEPSKKK KSESKNKNTV NDLALPSDDS EDDDFDPEGP  420
NSSEDQKTKT NSDESDFTSD SDDFCAEISK SSGKDKVSAP SFSDQTNGVD IMEAELEQDS  480
VLPASNRRQV GTLDYKKLYD VCLLLAFLHT INEAYGKETT DSSDEKEWSG HSPNGNPEDS  540
DTDSFAGPLK PAKTRRARGG RQNNERTAQS ERHSGSVSEQ HPEVLSNGTS STARKKGYGP  600
IVNQKLKAYF EKEPYPSRPA KESLGQELGL TFHQITRWFS STRHYSRVTA TKKGKRSENY  660
TAENNDGIAA DSIQQREPNG SVLGKPNVDR NGIISEERMA QKNLDEGEKE DTPFRQRISC  720
EQTLDGTPAN KHNTANSREV DPPIGAPGGN QQSDTSRNAE DTPLGQDIGC EQTVAAINQN  780
CTIGSSNVGS PKGVPGGNKR LNNSPSVGSP RRGSAEKNIP GLEHVDEARR KAILRELRKM  840
KAAGK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	115	137	KKKVPNEPVNNSTAAQPAARKRK
2	133	139	ARKRKRG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19510.1	6e-82	HB-PHD family protein

Link Out ? help Back to Top
Ensembl	TRIDC3BG045780.14