PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC3BG041070.6

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

HB-other

Protein Properties

Length: 1811aa MW: 202970 Da PI: 5.1352

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC3BG041070.6	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	55	1.4e-17	11	65	3	57
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR t++ql++Le+ + ++yps+++r+eL+ k+gL++rq ++WF+ rR k++k TRIDC3BG041070.6 11 KRMMKTPYQLDVLEQTYLAEQYPSEAMRAELSVKIGLSDRQLQMWFCHRRLKDRK 65 79999************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 1811 aa Download sequence
GPSGSGEKPV KRMMKTPYQL DVLEQTYLAE QYPSEAMRAE LSVKIGLSDR QLQMWFCHRR 60 LKDRKPPAKR QRRDEEGPAT PVPVPPQVLP IQAMLLGSTD IMMSAGSPYD EPLLPPTHSR 120 RGAGRSSAVP RISAPDIGRR YYEPLSVMLP PPVAPMQFRQ AELRVITSVE SQLGEPLRED 180 GPVLGVDFDP LPPGAFGAPI VPEQQKQPVR SYDAKIFSRH DPNLLKVSSF LPSMEHPFVP 240 NSFAGKRKSM VGNPPPQVHP HGGSRAVHEY QFLPEQPSDT YERASRSHYY DTPVEASNSR 300 IPSLTPGPHL LHVSEEMTPG YAFEGQGLLP QSGRPQVFSA VSTDYEMNQS NSNINSVPVD 360 GQFGSSHVAG FEDPLISSET RAYHDEDASR VDRKRKHNEE AKIAKEVEAH EKRIRKELEK 420 QDIMRRKREE QMRKEMERHD RERRKEEERL LRERQREEER FQREQRREHE RMEKFLQKQS 480 RRAEKQRQKE ELRKEKEMAR QKAANERATA RRIAREYMEL VEDERLELME LAAQSKGLPS 540 MLCLDSDTLQ QLDSFRGMLS HFPPEMVRLK APLSIKPWTG SEESVGKLLM VWKFLITFAD 600 VLELSSVTLD EFIQSLHDYD SRLLGELHVA LLKSIIKDIE DVARTPSVAL GVNPGGGHPQ 660 IVEGAYSWGF NIRNWQRHLN LLTWPEILRQ FALSAGFGPQ LKKRNAEDVF YRDENEGQDG 720 QNVISALRNG SAAVRAAALM KERGYTHRRS RHRLTPGTVK FAAFHVLSLE DSSGLTILEV 780 AEKIQKSGLR DLTTSKTPEA SIAAALSRDT KLFERTAPST YCVKSPYRKD PADSEAVLSA 840 AREKIRAFQN VLSDSEAEKE VDDVDRDEES DCDDDPDGDD VNIEVGDEKG PLLAVKAQGV 900 IPTATKVGDV KGDPDDLDAA LTQPISSTTS RKDIAMLSLG DSSAVGTSSV SPLRASSDHP 960 EVITGDPEDT QIDESNQGES WVQGLAEGDY CDLSVEERLN ALVALVGVAT EGNSIRAVLE 1020 ERLEAANAIK KQMWAEAQLD KRRSKEEFAS KVQYNSYTSL KADVIPENNA TETTPTPVRN 1080 LDIDNDENAG TSNNNEILNQ QNNAGIVSYE RNGTGQETSA TPDNLSAQQY AYADKTRSQL 1140 KSYIGHRAEQ LYVYRLLPLG QDRRRNRYWQ FSTSTSPNDP GSGRIFFESR EGYWRVIDSE 1200 EVFDALVASL DTRGSREAQL HSMLQRVEST FKEGIKRKRD AAIEQSAGRY LKNGATDTMR 1260 ASYRSEFGSP SSTHSSVSAD SATTYSDSFK IELGRNDVEK ISISKRADGF LKWMWSECCD 1320 RQLTCAMKYG KKRCSALMHS CNYCYQIYLA EERHCSSCHK TFKSIYNYSE HTSQCDEKRR 1380 TDPNWKMQIA DYSVPIGMRL LKLQLATIEA SIPSEALQPF WSDGYRKSWG VKLHSTTSIE 1440 EIFQMLTLLE GAIRRDYLSS DFETSNELLN NSKTEDMPSQ NPSSLPGTSV LPWVPDTTAA 1500 ITLRMLDLDY AVSYVQNQKK ERDGGDSMKL ASRYTVVKKA QDLEPLEPTG FDLYDARGSP 1560 SSGRRGRGRG SRGGSRGGRG RSRGGRIPRG ISSSSRIEFM DEDAAYEKAP RKNARRGRGR 1620 GRGRGRGRRT VRPRQPSSEG RGRSIPKANL LGSFSMLSNV KPSAVEESPR SSGAEEWGLE 1680 SRRPYIQGDG DENSSESESD QSEDNGENGQ PMDEEYEEQV PDYSRAYSGG LRPHAHVMMD 1740 DETEDDDEDA EGDGEGDEEE YDVNHASADV DDEMDEDDDD IGNDGDDGGD GVEVNADEDE 1800 GATSYSSEYS E

Sequence ? help Back to Top

Protein Sequence Length: 1811 aa Download sequence

GPSGSGEKPV KRMMKTPYQL DVLEQTYLAE QYPSEAMRAE LSVKIGLSDR QLQMWFCHRR  60
LKDRKPPAKR QRRDEEGPAT PVPVPPQVLP IQAMLLGSTD IMMSAGSPYD EPLLPPTHSR  120
RGAGRSSAVP RISAPDIGRR YYEPLSVMLP PPVAPMQFRQ AELRVITSVE SQLGEPLRED  180
GPVLGVDFDP LPPGAFGAPI VPEQQKQPVR SYDAKIFSRH DPNLLKVSSF LPSMEHPFVP  240
NSFAGKRKSM VGNPPPQVHP HGGSRAVHEY QFLPEQPSDT YERASRSHYY DTPVEASNSR  300
IPSLTPGPHL LHVSEEMTPG YAFEGQGLLP QSGRPQVFSA VSTDYEMNQS NSNINSVPVD  360
GQFGSSHVAG FEDPLISSET RAYHDEDASR VDRKRKHNEE AKIAKEVEAH EKRIRKELEK  420
QDIMRRKREE QMRKEMERHD RERRKEEERL LRERQREEER FQREQRREHE RMEKFLQKQS  480
RRAEKQRQKE ELRKEKEMAR QKAANERATA RRIAREYMEL VEDERLELME LAAQSKGLPS  540
MLCLDSDTLQ QLDSFRGMLS HFPPEMVRLK APLSIKPWTG SEESVGKLLM VWKFLITFAD  600
VLELSSVTLD EFIQSLHDYD SRLLGELHVA LLKSIIKDIE DVARTPSVAL GVNPGGGHPQ  660
IVEGAYSWGF NIRNWQRHLN LLTWPEILRQ FALSAGFGPQ LKKRNAEDVF YRDENEGQDG  720
QNVISALRNG SAAVRAAALM KERGYTHRRS RHRLTPGTVK FAAFHVLSLE DSSGLTILEV  780
AEKIQKSGLR DLTTSKTPEA SIAAALSRDT KLFERTAPST YCVKSPYRKD PADSEAVLSA  840
AREKIRAFQN VLSDSEAEKE VDDVDRDEES DCDDDPDGDD VNIEVGDEKG PLLAVKAQGV  900
IPTATKVGDV KGDPDDLDAA LTQPISSTTS RKDIAMLSLG DSSAVGTSSV SPLRASSDHP  960
EVITGDPEDT QIDESNQGES WVQGLAEGDY CDLSVEERLN ALVALVGVAT EGNSIRAVLE  1020
ERLEAANAIK KQMWAEAQLD KRRSKEEFAS KVQYNSYTSL KADVIPENNA TETTPTPVRN  1080
LDIDNDENAG TSNNNEILNQ QNNAGIVSYE RNGTGQETSA TPDNLSAQQY AYADKTRSQL  1140
KSYIGHRAEQ LYVYRLLPLG QDRRRNRYWQ FSTSTSPNDP GSGRIFFESR EGYWRVIDSE  1200
EVFDALVASL DTRGSREAQL HSMLQRVEST FKEGIKRKRD AAIEQSAGRY LKNGATDTMR  1260
ASYRSEFGSP SSTHSSVSAD SATTYSDSFK IELGRNDVEK ISISKRADGF LKWMWSECCD  1320
RQLTCAMKYG KKRCSALMHS CNYCYQIYLA EERHCSSCHK TFKSIYNYSE HTSQCDEKRR  1380
TDPNWKMQIA DYSVPIGMRL LKLQLATIEA SIPSEALQPF WSDGYRKSWG VKLHSTTSIE  1440
EIFQMLTLLE GAIRRDYLSS DFETSNELLN NSKTEDMPSQ NPSSLPGTSV LPWVPDTTAA  1500
ITLRMLDLDY AVSYVQNQKK ERDGGDSMKL ASRYTVVKKA QDLEPLEPTG FDLYDARGSP  1560
SSGRRGRGRG SRGGSRGGRG RSRGGRIPRG ISSSSRIEFM DEDAAYEKAP RKNARRGRGR  1620
GRGRGRGRRT VRPRQPSSEG RGRSIPKANL LGSFSMLSNV KPSAVEESPR SSGAEEWGLE  1680
SRRPYIQGDG DENSSESESD QSEDNGENGQ PMDEEYEEQV PDYSRAYSGG LRPHAHVMMD  1740
DETEDDDEDA EGDGEGDEEE YDVNHASADV DDEMDEDDDD IGNDGDDGGD GVEVNADEDE  1800
GATSYSSEYS E

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	1616	1625	RGRGRGRGRG
2	1616	1626	RGRGRGRGRGR
3	1618	1627	RGRGRGRGRG
4	1618	1628	RGRGRGRGRGR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44180.1	0.0	HB-other family protein

Link Out ? help Back to Top
Ensembl	TRIDC3BG041070.6