PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC3BG039250.3

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C3H

Protein Properties

Length: 329aa MW: 35972.4 Da PI: 8.4619

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC3BG039250.3	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	38	2.7e-12	255	280	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +ktelC+ + +tG C+y d+C+FaHg TRIDC3BG039250.3 255 FKTELCNKWEETGACPYCDQCQFAHG 280 79***********************9 PP
2	zf-CCCH	18.3	4e-06	293	318	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykte Cr + + C+yG rC+F H+ TRIDC3BG039250.3 293 YKTEVCRMVLNGEVCPYGHRCHFRHS 318 9****999966********998 PP

Sequence ? help Back to Top
Protein Sequence Length: 329 aa Download sequence
VSPANADRLR SAFELKPYAF GDQRLSSSPR YLPGGDDGLY RCSSPFSPSL GFSSPSPLTT 60 SVSLSPSSSG SLVDDGDYDG AAAADATGHR LQLARLALQY QEVADRYELC LSHLAEAVDE 120 AAILRRENAE LRVANNDLAR RVALLGGKET AAVVIADEIR RFRLGEHKGA SKQRAPEKLA 180 VLPKSISVRS NDYLKMNQAA PAAATPAAYN RKPSSLDRQQ RAYAGLGADG GKKGEEQKTK 240 QDAAGELDVY NQGMFKTELC NKWEETGACP YCDQCQFAHG VSELRPVIRH PRYKTEVCRM 300 VLNGEVCPYG HRCHFRHSLT AAERLLRSR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66810.1	3e-58	C3H family protein

Link Out ? help Back to Top
Ensembl	TRIDC3BG039250.3