PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIDC3BG037700.9 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | C3H | ||||||||
Protein Properties | Length: 239aa MW: 26106.7 Da PI: 8.427 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 26.8 | 9e-09 | 18 | 38 | 4 | 25 |
---SGGGGTS--TTTTT-SS-S CS zf-CCCH 4 elCrffartGtCkyGdrCkFaH 25 ++C+++a+ G Ck G +CkF+H TRIDC3BG037700.9 18 KPCPHYAK-GKCKLGTNCKFIH 38 59******.************* PP | |||||||
2 | zf-CCCH | 27.4 | 5.8e-09 | 92 | 117 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C+f+ +tG C yG +C+F+H+ TRIDC3BG037700.9 92 PGEVDCSFYIKTGSCMYGRTCRFNHP 117 57899********************8 PP | |||||||
3 | zf-CCCH | 35.9 | 1.2e-11 | 162 | 186 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++ C+f+ +tG+Ck+ +rCkF+H+ TRIDC3BG037700.9 162 GETVCDFYKKTGFCKFSERCKFHHP 186 6789********************9 PP | |||||||
4 | zf-CCCH | 31.8 | 2.5e-10 | 219 | 238 | 4 | 23 |
---SGGGGTS--TTTTT-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkF 23 e C ++++tG Ck+G +CkF TRIDC3BG037700.9 219 EACAYYMKTGACKFGVQCKF 238 78****************** PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence |
PQESLISGNS TLPVKPSKPC PHYAKGKCKL GTNCKFIHAK DMEAPSSGGN ESENTATAEA 60 AGHHGAAHDS VSAKKSAPVA LEHNSKGMPI RPGEVDCSFY IKTGSCMYGR TCRFNHPGRH 120 IQASVVPGEM LNPAAKFLPS FDFRVTHVPI EPEPITYPQR PGETVCDFYK KTGFCKFSER 180 CKFHHPVDRS APDSIAKWEP SQQPVTLTVA GFPRREDAEA CAYYMKTGAC KFGVQCKFD |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12680.1 | 3e-60 | C3H family protein |
Link Out ? help Back to Top | |
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Ensembl | TRIDC3BG037700.9 |