PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIDC3BG037700.7 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | C3H | ||||||||
Protein Properties | Length: 223aa MW: 24393.9 Da PI: 9.1315 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 27.5 | 5.3e-09 | 42 | 67 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C+f+ +tG C yG +C+F+H+ TRIDC3BG037700.7 42 PGEVDCSFYIKTGSCMYGRTCRFNHP 67 57899********************8 PP | |||||||
2 | zf-CCCH | 36.1 | 1.1e-11 | 112 | 136 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++ C+f+ +tG+Ck+ +rCkF+H+ TRIDC3BG037700.7 112 GETVCDFYKKTGFCKFSERCKFHHP 136 6789********************9 PP | |||||||
3 | zf-CCCH | 40.2 | 5.6e-13 | 169 | 192 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 e C ++++tG Ck+G +CkF H+p TRIDC3BG037700.7 169 EACAYYMKTGACKFGVQCKFDHPP 192 78********************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 223 aa Download sequence |
AKGKCKLGTN SGHHGAAHDS VSAKKSAPVA LEHNSKGMPI RPGEVDCSFY IKTGSCMYGR 60 TCRFNHPGRH IQASVVPGEM LNPAAKFLPS FDFRVTHVPI EPEPITYPQR PGETVCDFYK 120 KTGFCKFSER CKFHHPVDRS APDSIAKWEP SQQPVTLTVA GFPRREDAEA CAYYMKTGAC 180 KFGVQCKFDH PPLGEAIAKV SKHGEGKEGG KKKAVGLSYV LEN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12680.1 | 1e-57 | C3H family protein |
Link Out ? help Back to Top | |
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Ensembl | TRIDC3BG037700.7 |