PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC3BG037700.6

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C3H

Protein Properties

Length: 273aa MW: 29647.8 Da PI: 8.7779

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC3BG037700.6	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	26.5	1.1e-08	18	38	4	25
---SGGGGTS--TTTTT-SS-S CS zf-CCCH 4 elCrffartGtCkyGdrCkFaH 25 ++C+++a+ G Ck G +CkF+H TRIDC3BG037700.6 18 KPCPHYAK-GKCKLGTNCKFIH 38 59****.*********** PP
2	zf-CCCH	27.1	7e-09	92	117	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C+f+ +tG C yG +C+F+H+ TRIDC3BG037700.6 92 PGEVDCSFYIKTGSCMYGRTCRFNHP 117 57899********************8 PP
3	zf-CCCH	35.7	1.5e-11	162	186	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++ C+f+ +tG+Ck+ +rCkF+H+ TRIDC3BG037700.6 162 GETVCDFYKKTGFCKFSERCKFHHP 186 6789********************9 PP
4	zf-CCCH	39.8	7.3e-13	219	242	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 e C ++++tG Ck+G +CkF H+p TRIDC3BG037700.6 219 EACAYYMKTGACKFGVQCKFDHPP 242 78********************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 273 aa Download sequence
VRESLISGNS TLPVKPSKPC PHYAKGKCKL GTNCKFIHAK DMEAPSSGGN ESENTATAEA 60 AGHHGAAHDS VSAKKSAPVA LEHNSKGMPI RPGEVDCSFY IKTGSCMYGR TCRFNHPGRH 120 IQASVVPGEM LNPAAKFLPS FDFRVTHVPI EPEPITYPQR PGETVCDFYK KTGFCKFSER 180 CKFHHPVDRS APDSIAKWEP SQQPVTLTVA GFPRREDAEA CAYYMKTGAC KFGVQCKFDH 240 PPLGEAIAKV SKHGEGKEGG KKKAVGLSYV LEN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12680.1	1e-65	C3H family protein

Link Out ? help Back to Top
Ensembl	TRIDC3BG037700.6