PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIDC3BG037700.5 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | C3H | ||||||||
Protein Properties | Length: 242aa MW: 26506.6 Da PI: 7.9768 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 33.5 | 7.2e-11 | 125 | 150 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C f++rt tCky ++CkF H++ TRIDC3BG037700.5 125 GEKECAFYMRTRTCKYEETCKFDHPQ 150 7899********************97 PP | |||||||
2 | zf-CCCH | 38.1 | 2.5e-12 | 174 | 200 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+ff +tG Ck+G++CkF+H++ TRIDC3BG037700.5 174 PGEPNCPFFVKTGDCKFGSKCKFNHSK 200 5799*********************95 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence |
MSGYPFHPYG RGGVGEDASA MSGYPFYPYG RGGVGDDAAA RYSSYEIDLI AARYAGDPSP 60 YPYPSASGGF DPHVGARRPA DVLYHQSIMG SHSTIGQSYA FYSPNTMVKR PRLESSLPIY 120 PQRPGEKECA FYMRTRTCKY EETCKFDHPQ WVPEGGIPNW KEGTKAGESY PERPGEPNCP 180 FFVKTGDCKF GSKCKFNHSK KKDDGTVAGP GDKESLFSGN STLPVKPSEP CPVKGYPPSL 240 FC |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12680.1 | 6e-54 | C3H family protein |
Link Out ? help Back to Top | |
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Ensembl | TRIDC3BG037700.5 |