PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIDC3BG037700.4
Organism
Triticum dicoccoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C3H
Protein Properties Length: 426aa    MW: 46546.8 Da    PI: 8.9545
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIDC3BG037700.4genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH32.51.5e-104873227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                      ++++C f++rt tCky ++CkF H++
  TRIDC3BG037700.4 48 GEKECAFYMRTRTCKYEETCKFDHPQ 73
                      7899********************97 PP
2zf-CCCH37.15.2e-1297123127
                       --S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                       +++++C+ff +tG Ck+G++CkF+H++
  TRIDC3BG037700.4  97 PGEPNCPFFVKTGDCKFGSKCKFNHSK 123
                       5789*********************95 PP
3zf-CCCH25.81.9e-08171191425
                       ---SGGGGTS--TTTTT-SS-S CS
           zf-CCCH   4 elCrffartGtCkyGdrCkFaH 25 
                       ++C+++a+ G Ck G +CkF+H
  TRIDC3BG037700.4 171 KPCPHYAK-GKCKLGTNCKFIH 191
                       59******.************* PP
4zf-CCCH26.41.2e-08245270126
                       --S---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                       ++++ C+f+ +tG C yG +C+F+H+
  TRIDC3BG037700.4 245 PGEVDCSFYIKTGSCMYGRTCRFNHP 270
                       57899********************8 PP
5zf-CCCH34.92.6e-11315339226
                       -S---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                       ++  C+f+ +tG+Ck+ +rCkF+H+
  TRIDC3BG037700.4 315 GETVCDFYKKTGFCKFSERCKFHHP 339
                       6789********************9 PP
6zf-CCCH39.11.3e-12372395427
                       ---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                       e C ++++tG Ck+G +CkF H+p
  TRIDC3BG037700.4 372 EACAYYMKTGACKFGVQCKFDHPP 395
                       78********************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 426 aa     Download sequence    
MRRRGTLPTR STSSRHATLA TRHPTPTPPP PADSTRMSAR GDPQMRPGEK ECAFYMRTRT  60
CKYEETCKFD HPQWVPEGGI PNWKEGTKAG ESYPERPGEP NCPFFVKTGD CKFGSKCKFN  120
HSKKKDDGTV AGPGDKESLF SGNSTLPVKP SEPCPESLIS GNSTLPVKPS KPCPHYAKGK  180
CKLGTNCKFI HAKDMEAPSS GGNESENTAT AEAAGHHGAA HDSVSAKKSA PVALEHNSKG  240
MPIRPGEVDC SFYIKTGSCM YGRTCRFNHP GRHIQASVVP GEMLNPAAKF LPSFDFRVTH  300
VPIEPEPITY PQRPGETVCD FYKKTGFCKF SERCKFHHPV DRSAPDSIAK WEPSQQPVTL  360
TVAGFPRRED AEACAYYMKT GACKFGVQCK FDHPPLGEAI AKVSKHGEGK EGGKKKAVGL  420
SYVLEN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.11e-104C3H family protein