PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIDC3BG037700.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | C3H | ||||||||
Protein Properties | Length: 503aa MW: 54788.7 Da PI: 8.384 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 32.2 | 1.8e-10 | 125 | 150 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C f++rt tCky ++CkF H++ TRIDC3BG037700.2 125 GEKECAFYMRTRTCKYEETCKFDHPQ 150 7899********************97 PP | |||||||
2 | zf-CCCH | 36.8 | 6.3e-12 | 174 | 200 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+ff +tG Ck+G++CkF+H++ TRIDC3BG037700.2 174 PGEPNCPFFVKTGDCKFGSKCKFNHSK 200 5789*********************95 PP | |||||||
3 | zf-CCCH | 25.5 | 2.3e-08 | 248 | 268 | 4 | 25 |
---SGGGGTS--TTTTT-SS-S CS zf-CCCH 4 elCrffartGtCkyGdrCkFaH 25 ++C+++a+ G Ck G +CkF+H TRIDC3BG037700.2 248 KPCPHYAK-GKCKLGTNCKFIH 268 59******.************* PP | |||||||
4 | zf-CCCH | 26.1 | 1.5e-08 | 322 | 347 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C+f+ +tG C yG +C+F+H+ TRIDC3BG037700.2 322 PGEVDCSFYIKTGSCMYGRTCRFNHP 347 57899********************8 PP | |||||||
5 | zf-CCCH | 34.6 | 3.2e-11 | 392 | 416 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++ C+f+ +tG+Ck+ +rCkF+H+ TRIDC3BG037700.2 392 GETVCDFYKKTGFCKFSERCKFHHP 416 6789********************9 PP | |||||||
6 | zf-CCCH | 38.8 | 1.6e-12 | 449 | 472 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 e C ++++tG Ck+G +CkF H+p TRIDC3BG037700.2 449 EACAYYMKTGACKFGVQCKFDHPP 472 78********************96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 503 aa Download sequence |
MSGYPFHPYG RGGVGEDASA MSGYPFYPYG RGGVGDDAAA RYSSYEIDLI AARYAGDPSP 60 YPYPSASGGF DPHVGARRPA DVLYHQSIMG SHSTIGQSYA FYSPNTMVKR PRLESSLPIY 120 PQRPGEKECA FYMRTRTCKY EETCKFDHPQ WVPEGGIPNW KEGTKAGESY PERPGEPNCP 180 FFVKTGDCKF GSKCKFNHSK KKDDGTVAGP GDKESLFSGN STLPVKPSEP CPESLISGNS 240 TLPVKPSKPC PHYAKGKCKL GTNCKFIHAK DMEAPSSGGN ESENTATAEA AGHHGAAHDS 300 VSAKKSAPVA LEHNSKGMPI RPGEVDCSFY IKTGSCMYGR TCRFNHPGRH IQASVVPGEM 360 LNPAAKFLPS FDFRVTHVPI EPEPITYPQR PGETVCDFYK KTGFCKFSER CKFHHPVDRS 420 APDSIAKWEP SQQPVTLTVA GFPRREDAEA CAYYMKTGAC KFGVQCKFDH PPLGEAIAKV 480 SKHGEGKEGG KKKAVGLSYV LEN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12680.1 | 1e-122 | C3H family protein |
Link Out ? help Back to Top | |
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Ensembl | TRIDC3BG037700.2 |