PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIDC3BG035310.5
Organism
Triticum dicoccoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C3H
Protein Properties Length: 569aa    MW: 61612.4 Da    PI: 5.1221
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIDC3BG035310.5genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.73e-06303324426
                       ---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                       +lC+f++  G C+ G+ CkF+H+
  TRIDC3BG035310.5 303 KLCHFYMH-GKCQQGNACKFSHD 324
                       79**8888.*************7 PP
2zf-CCCH18.44e-06330352225
                       -S---SGGGGTS--TTTTT-SS-S CS
           zf-CCCH   2 ktelCrffartGtCkyGdrCkFaH 25 
                       k ++C +far G C  Gd C++ H
  TRIDC3BG035310.5 330 KSKPCTHFAR-GSCLKGDDCPYDH 352
                       6789******.************* PP
3zf-CCCH22.32.4e-07358379526
                       --SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                       +C++f ++G C +Gd+CkF+H+
  TRIDC3BG035310.5 358 PCHNFVENGMCFRGDKCKFSHV 379
                       7********************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 569 aa     Download sequence    
ADPAVAPQRY MENQVAGVQR VEGVTDMVVG GNVCRETVAF VEELGAEDVL RSMKDCLEGE  60
VDELAEPDVV VVNDDEHLLL DTMMTNFSGL IADASGGTTS MLNYGVSGGE PHNDGNIAEG  120
VKELGAGTEE DRPVGGLDQH SVDGGVVEEG EIEGDMQALD VDESDDSELE DADDEELEED  180
FTNRVLGENE SSGQDIPCLN LLSTPKTKGT SDLVLNKEGY IKDDALKHVT RAQAVSYDEI  240
VEWNETPLPD AEAPKLGKRK RHLTEERKAK KTKNKRVKRA QQRIADGVKR LKLAPVIKPK  300
PVKLCHFYMH GKCQQGNACK FSHDTTPLTK SKPCTHFARG SCLKGDDCPY DHELSKYPCH  360
NFVENGMCFR GDKCKFSHVV VPTADGPSKP DAKKSDASLV SEKPGREQTS SQKASTVHDG  420
ERVTSAPTKH YSILKNLAGI SVNALKASTS TPKGVQFRPS SKDRSNSSML HQDALTIEKH  480
MYTNGSKHQN FGGPQAEEGD KNVSPNKQRS APLLDEKNSS KEASSHPSSD PKGTSLPTGS  540
TTVLGSLSTQ HEVSEASRIL QEFLFGAGS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.16e-07C3H family protein