PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIDC3BG035310.4
Organism
Triticum dicoccoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C3H
Protein Properties Length: 600aa    MW: 64704.7 Da    PI: 4.943
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIDC3BG035310.4genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.73.2e-06335356426
                       ---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                       +lC+f++  G C+ G+ CkF+H+
  TRIDC3BG035310.4 335 KLCHFYMH-GKCQQGNACKFSHD 356
                       79**8888.*************7 PP
2zf-CCCH18.34.2e-06362384225
                       -S---SGGGGTS--TTTTT-SS-S CS
           zf-CCCH   2 ktelCrffartGtCkyGdrCkFaH 25 
                       k ++C +far G C  Gd C++ H
  TRIDC3BG035310.4 362 KSKPCTHFAR-GSCLKGDDCPYDH 384
                       6789******.************* PP
3zf-CCCH22.22.5e-07390411526
                       --SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                       +C++f ++G C +Gd+CkF+H+
  TRIDC3BG035310.4 390 PCHNFVENGMCFRGDKCKFSHV 411
                       7********************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 600 aa     Download sequence    
GKDLGEEETA VRTSVIENPS PAAVDAATGN PIADPAVAPQ RYMENQVAGV QRVEGVTDMV  60
VGGNVCRETV AFVEELGAED VLRSMKDCLE GEVDELAEPD VVVVNDDEHL LLDTMMTNFS  120
GLIADASGGT TSMLNYGVSG GEPHNDGNIA EGVKELGAGT EEDRPVGGLD QHSVDGGVVE  180
EGEIEGDMQA LDVDESDDSE LEDADDEELE EDFTNRVLGE NESSGQDIPC LNLLSTPKTK  240
GTSDLVLNKE GYIKDDALKH VTRAQAVSYD EIVEWNETPL PDAEAPKLGK RKRHLTEERK  300
AKKTKNKRVK RAQQRIADGV KRLKLAPVIK PKPVKLCHFY MHGKCQQGNA CKFSHDTTPL  360
TKSKPCTHFA RGSCLKGDDC PYDHELSKYP CHNFVENGMC FRGDKCKFSH VVPTADGPSK  420
PDAKKSDASL VSEKPGREQT SSQKASTVHD GERVTSAPTK HYSILKNLAG ISVNALKAST  480
STPKGVQFRP SSKDRSNSSM LHQDALTIEK HMYTNGSKHQ NFGGPQAEEG DKNVSPNKQR  540
SAPLLDEKNS SKEASSHPSS DPKGTSLPTG STTVLGSLST QHEVSEASRI LQEFLFGAGS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.13e-07C3H family protein