PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIDC3BG035310.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | C3H | ||||||||
Protein Properties | Length: 678aa MW: 73138.4 Da PI: 5.1676 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 18.5 | 3.7e-06 | 413 | 434 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 +lC+f++ G C+ G+ CkF+H+ TRIDC3BG035310.3 413 KLCHFYMH-GKCQQGNACKFSHD 434 79**8888.*************7 PP | |||||||
2 | zf-CCCH | 18.1 | 4.9e-06 | 440 | 462 | 2 | 25 |
-S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaH 25 k ++C +far G C Gd C++ H TRIDC3BG035310.3 440 KSKPCTHFAR-GSCLKGDDCPYDH 462 6789******.************* PP | |||||||
3 | zf-CCCH | 22 | 2.9e-07 | 468 | 489 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f ++G C +Gd+CkF+H+ TRIDC3BG035310.3 468 PCHNFVENGMCFRGDKCKFSHV 489 7********************7 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 678 aa Download sequence |
MEDSLVPPVP PAPTTLFLTR RRSHLDSASY RTLSRLFSHC LHHRPSQLAA PAPLEVEPAA 60 ANPICDESPQ GCSVPPGRGK DLGEEETAVR TSVIENPSPA AVDAATGNPI ADPAVAPQRY 120 MENQVAGVQR VEGVTDMVVG GNVCRETVAF VEELGAEDVL RSMKDCLEGE VDELAEPDVV 180 VVNDDEHLLL DTMMTNFSGL IADASGGTTS MLNYGVSGGE PHNDGNIAEG VKELGAGTEE 240 DRPVGGLDQH SVDGGVVEEG EIEGDMQALD VDESDDSELE DADDEELEED FTNRVLGENE 300 SSGQDIPCLN LLSTPKTKGT SDLVLNKEGY IKDDALKHVT RAQAVSYDEI VEWNETPLPD 360 AEAPKLGKRK RHLTEERKAK KTKNKRVKRA QQRIADGVKR LKLAPVIKPK PVKLCHFYMH 420 GKCQQGNACK FSHDTTPLTK SKPCTHFARG SCLKGDDCPY DHELSKYPCH NFVENGMCFR 480 GDKCKFSHVV PTADGPSKPD AKKSDASLVS EKPGREQTSS QKASTVHDGE RVTSAPTKHY 540 SILKNLAGIS VNALKASTST PKGVQFRPSS KDRSNSSMLH QDALTIEKHM YTNGSKHQNF 600 GGPQAEEGDK NVSPNKQRSA PLLDEKNSSK EASSHPSSDP KGTSLPTGST TVLGSLSTQH 660 EVSEASRILQ EFLFGAGS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G08505.1 | 3e-07 | C3H family protein |
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Ensembl | TRIDC3BG035310.3 |